NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19915.1 Public Mus musculus 6 Tmem168 23 108 98 CCDS HistoryNCBI Gene:101118Re-query CCDS DB by CCDS ID:19915.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19915.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031554.8 ENSMUSP00000031554.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031554.8Link to Ensembl Protein Viewer:ENSMUSP00000031554.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031554Re-query CCDS DB by Protein ID:ENSMUSP00000031554
Original member Current member NCBI NM_028990.5 NP_083266.1 Accepted alive Link to Nucleotide Sequence:NM_028990.5Link to Protein Sequence:NP_083266.1Re-query CCDS DB by Nucleotide ID:NM_028990Re-query CCDS DB by Protein ID:NP_083266Link to BLAST:NP_083266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083266.1 697 Q91VX9 697 100% 0 0

Chromosomal Locations for CCDS 19915.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13582787 13583334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13591270 13591544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13594944 13595086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13602238 13603365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGTGCAGATCACTGCGATACTGTGTTAGTCATTGTCTCTATCTAGCAATGACTAGGCTGGAAGAAGTAA
ATAGAGAAGTGAACATGCATTCCTCCGTGCGGTACCTCGGCTATCTAGCCAGGATCAACTTACTTGTGGC
CATATGTTTAGGCCTTTATGTAAGATGGGAAAAAACAGCAAATTCCTTAATTTTGGTGATTTTTATCCTC
GGCCTCTTTGTTCTTGGGATCGCCAGCATACTCTACTATTACTTTTCAATGGAAGCAGCCAGTTTAAGTC
TCTCCAATCTCTGGTTTGGATTTCTGCTTGGCCTTCTGTGTTTTCTTGATAATTCATCCTTTAAAAGTGA
TGTGAAAGAAGAAACAACCAAATATTTGCTTCTGACATCTATAGTTTTAAGGATATTGTGTGCTTTGGTG
GAGAGAATTTCTGGATATGTCCGCCATCGGCCTACTTTACTAACCACAGTGGAGTTTCTGGAACTTGTTG
GGTTTGCCATCGCCAGCACAACTATGTTGGTGGAGAAGTCTCTGAGTGTTATTTTGCTGGTTATGGCTTT
GGCCATGCTCATTATCGACCTGAGAATGAAGTCTTTTCTAGCTATTCCAAACTTAATCATTTTTTCAGTA
TTGTTATTTTTCTCTTCATTGGAAACTCCCCAAAATCCAATTGCTTTTGCATGTTTTTTTATTTGCCTGG
TAACTGATCCTTTTCTTGACATTTATTTTAGTGGACTTTCAGTAACTGAGAGGTGGAAACCTTTTCTGCA
TCGTGGGAGAATTTGCAGGAGACTTTCTGTGCTTTTCACTGCAATGATTGAGCTTACATTCTTCATCCTT
TCAGCATTTAAACTTAGAGACACTCATCTCTGGTATTTTGTGATACCAGGTTTTTCCATTTTCGGATTTT
TCTGGATGATTTGCCATATTATTTTTCTTTTAACTCTTTGGGGATTTCATACTAAGTTGAATGACTGCCA
TAAAGTGTATATCAACCACAGGGCAGATAACAATAGCCTTGACAGAATCATGGCATCCAAAGGGATGCGT
CATTTTTGCTTAATTTCAGAGCAGTTAGTTTTTTTTAGTCTTCTTGCAACGGCAATTTTGGGAGCAGTCT
CCTGGCAGCCAACCAATGGAATCTTCTTGAGCATGTTTCTCATTGTCTTGCCGCTGGAGTCCATGGCTCA
TGGGCTCTTCCATGAACTTGGCAACTGCTTAGGGGGAACCTCTGTTGGATACGCTATTGTGATCCCTACC
AACTTCTGCAGCCCTGATGGCCAGCCAACACTGCTTCCGCCAGAACATGTACAGGAGTTAAATTTGAGGT
CTACTGGCATGCTCAATGCCATCCAAAGATTTTTTGCATATCATATGATTGAGACCTATGGATGTGACTA
TTCCACAAGTGGGCTGTCTTTTGATACTCTGCATTCCAAACTGAAAGCTTTCCTTGAACTTCGGACAGTG
GATGGACCTAGACATGATACATATGTTTTATATTACAGTGGACACACCCATGGCTCAGGAGAGTGGGCCC
TCGCAGGTGGAGACATACTTCGCCTTGATACGCTTTTAGAATGGTGGAGAGAGAAGAACGGTTCCTTCTG
TTCCCGGCTTATCATCATCTTAGACAGCGAGAATTCAACCCCATGGGTGAAAGAAGTGAGAAAGATTAAT
GACCAGTATGTTGCAGTTCAGGGAGCTGAGCTGGCGAAGACAGTAGATATTGAAGAAGCTGACCCGCCAC
AGCTGGGTGACTTTACTAGAGACTGGGTAGAATACAACTGTAACTCCACAAACAACATCTGCTGGACTGA
GAAGGGGCGCACAGTGAGGGCCGTGTATGGCGTGTCAAAGCGCTGGAGCGACTACACGCTGCACCTGCCG
ACAGGAAGCGATGTGGCCAAGCACTGGATGTTACACTTCCCTCGGGTTACGTATCCGTTAGTGCACTTGG
CCAACTGGTTATGTGGCCTGAACCTCTTTTGGGTCTGCAAAGCTTGTTTTAGGTGCTTGAAAAGGTTAAA
AATGAGTTGGTTTCTTCCTACAGTGCTGGACACAGGACAAGGCTTTAAACTTGTCAAATCTTAA

Translation (697 aa):
MCRSLRYCVSHCLYLAMTRLEEVNREVNMHSSVRYLGYLARINLLVAICLGLYVRWEKTANSLILVIFIL
GLFVLGIASILYYYFSMEAASLSLSNLWFGFLLGLLCFLDNSSFKSDVKEETTKYLLLTSIVLRILCALV
ERISGYVRHRPTLLTTVEFLELVGFAIASTTMLVEKSLSVILLVMALAMLIIDLRMKSFLAIPNLIIFSV
LLFFSSLETPQNPIAFACFFICLVTDPFLDIYFSGLSVTERWKPFLHRGRICRRLSVLFTAMIELTFFIL
SAFKLRDTHLWYFVIPGFSIFGFFWMICHIIFLLTLWGFHTKLNDCHKVYINHRADNNSLDRIMASKGMR
HFCLISEQLVFFSLLATAILGAVSWQPTNGIFLSMFLIVLPLESMAHGLFHELGNCLGGTSVGYAIVIPT
NFCSPDGQPTLLPPEHVQELNLRSTGMLNAIQRFFAYHMIETYGCDYSTSGLSFDTLHSKLKAFLELRTV
DGPRHDTYVLYYSGHTHGSGEWALAGGDILRLDTLLEWWREKNGSFCSRLIIILDSENSTPWVKEVRKIN
DQYVAVQGAELAKTVDIEEADPPQLGDFTRDWVEYNCNSTNNICWTEKGRTVRAVYGVSKRWSDYTLHLP
TGSDVAKHWMLHFPRVTYPLVHLANWLCGLNLFWVCKACFRCLKRLKMSWFLPTVLDTGQGFKLVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH