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Report for CCDS51436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51436.1 Public Mus musculus 5 Chpf2 23 108 98 CCDS HistoryNCBI Gene:100910Re-query CCDS DB by CCDS ID:51436.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088295.8 ENSMUSP00000085633.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088295.8Link to Ensembl Protein Viewer:ENSMUSP00000085633.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088295Re-query CCDS DB by Protein ID:ENSMUSP00000085633
Original member Current member EBI ENSMUST00000121863.4 ENSMUSP00000112804.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121863.4Link to Ensembl Protein Viewer:ENSMUSP00000112804.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121863Re-query CCDS DB by Protein ID:ENSMUSP00000112804
Original member Current member NCBI NM_133913.2 NP_598674.2 Accepted alive Link to Nucleotide Sequence:NM_133913.2Link to Protein Sequence:NP_598674.2Re-query CCDS DB by Nucleotide ID:NM_133913Re-query CCDS DB by Protein ID:NP_598674Link to BLAST:NP_598674.2

Chromosomal Locations for CCDS 51436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24588038 24588300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24589097 24589661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24590309 24590491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24591069 24592364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGCGACTGAGCTCCCTGCTGGCTCTGCTGCGGCCAGTGCTCCCCCTCATCCTAGGACTGTCTCTGGGAT
GCAGCCTGAGCCTCCTGCGGGTTTCCTGGATCCAGGGTGAGGGAGAAGATCCCTGTGTAGAGGCTGTGGG
GAAGCCAGGAGGGCCACAGAATCCAGACTCAAAAAATGGGCTGGACCAAGGCGATGAAGACTTCAGACCC
AGGATTGTGCCTTACTACAGGGATCCTAACAAGCCCTACAAGAAGGTGCTCAGGACTCGGTATATACAGA
CAGAGCTGGGCTCTCGTGAGCGCCTGCTGGTGGCTGTCCTGACTTCTCGAGCCACACTGTCCACCCTGGC
CGTCGCGGTTAACCGTACAGTAGCACATCACTTCCCTCGGTTACTCTACTTCACAGGGCAGCGAGGGGCC
CGGGCTCCTGCAGGGATGCAGGTGGTGTCTCATGGAGATGAGCGGCCTGCCTGGCTCATGTCAGAGACCC
TGCGCCACCTTCACACACACTTTGGGGCAGACTATGACTGGTTCTTCATCATGCAGGACGACACATATGT
GCAGGCCCCCAGATTGGCAGCTCTTGCTGGTCACCTTAGCATCAACCAAGACCTGTACTTAGGCCATGCA
GAGGAATTCATTGGTACAGGAGAGCAGGCCCGGTACTGCCATGGGGGCTTTGGCTACCTGTTGTCACGGA
GTCTCCTATTGCGCTTGCGGCCACATCTGGATGGCTGCCGAGGGGACATTCTCAGTGCCCGGCCTGATGA
ATGGCTTGGCCGCTGCCTCATCGACACTCTGGGCATCGGCTGTGTCTCACAGCACCAGGGGCAACAGTAT
CGCTCCTTCGAACTGGCCAAGAATAGGGACCCTGAGAAGGAGGAGAGCCCTGCTTTCCTGAGTGCCTTCG
CCGTTCACCCGGTCCCCGAGGGCACCCTCATGTACCGGCTCCACAAACGCTTCAGTGCTCTGGAGTTGGA
GCGGGCTTACAGCGAAATAGAACAACTGCAGGCCCAGATCCGGAACCTGACGGTGCTGACCCCTGAGGGG
GAGGCAGGGCTAAGCTGGCCTGTTGGGCTCCCGGCCCCTTTCACTCCACACTCTCGCTTCGAGGTGCTGG
GCTGGGACTACTTCACGGAGCAACACACCTTCGCCTGTGCAGACGGGGCTCCCAAGTGTCCCCTGCAGGG
GGCTAGCAGGGCAGATGTAGGGGACGCTGTGGACACAGCTCTGGAGCAGCTCAATCGGCGCTATCAGCCC
CGCCTGCGCTTCCGGAAGCAGCGGCTTCTCAATGGCTACCGGCGCTTTGACCCTGCAAGGGGCATGGAAT
ACACCCTCGACTTGCTGCTGGAAGCTGTGACTCAGCGAGGGCACAGACGCTCCCTGGCCCGCAGAGTGAG
CCTGCTGAGGCCACTGAGCAGAGTGGAAATCCTGCCTATGCCCTATGTCACCGAGGCTACCCGGGTGCAA
CTGGTGCTGCCACTCCTGGTGGCTGAAGCTCCGGCCGCCTTGGCTTTTCTTGAGGCCTTTGCTGCCAGTG
TTCTGGAGCCTCGAGAACATGCATTGCTCACCCTGTTGTTGGTCTATGGGCCCCGGGAAGGCCGAGGGGG
CCCTGACCCATTTCTCGGAGTGAAGGCTGCAGCAGCTGAGTTAGAACGACGGTACCCAGGGGCGAGGCTG
GCCTGGCTCGCTGTGCGAGCAGAGGCCCCTTCGCAGGTGCGACTCATGGATGTCATCTCCAAGAAACACC
CTGTGGACACACTCTTCTTCCTTACCACCGTGTGGACAAGACCTGGGTCGGAAGTCCTCAACCGCTGCCG
TATGAATGCAATCTCGGGCTGGCAGGCCTTCTTTCCGGTCCACTTTCAGGAGTTCAACCCTGCTCTGTCA
CCACAGAGATCTCCCCCAGGTGTCCCTGGGGCTGATCCCCCCTCCCCTGGTGTGGACCCTTCTAGGGGGG
CTCCGGTCGGGGGCAGATTTGACCGGCAGGCTTCAGCAGAGGGCTGCTTCTACAATGCTGACTACCTGGC
AGCCCGCGCCCGGCTGGCTGGCGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTG
ATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCAGGGCTGGTGCAGAAGT
TCTCTCTGCGGGACTGTAGCCCCCGGCTCAGCGAGGAACTGTACCACCGTTGTCGCCTCAGCAATCTGGA
GGGGCTGGGGGCCCGTACCCAGCTAGCCATGGCTCTGTTTGAACAGGAACAGGCCAACAGCACTTAG

Translation (768 aa):
MRLSSLLALLRPVLPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGKPGGPQNPDSKNGLDQGDEDFRP
RIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGA
RAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGHA
EEFIGTGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDTLGIGCVSQHQGQQY
RSFELAKNRDPEKEESPAFLSAFAVHPVPEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEG
EAGLSWPVGLPAPFTPHSRFEVLGWDYFTEQHTFACADGAPKCPLQGASRADVGDAVDTALEQLNRRYQP
RLRFRKQRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRSLARRVSLLRPLSRVEILPMPYVTEATRVQ
LVLPLLVAEAPAALAFLEAFAASVLEPREHALLTLLLVYGPREGRGGPDPFLGVKAAAAELERRYPGARL
AWLAVRAEAPSQVRLMDVISKKHPVDTLFFLTTVWTRPGSEVLNRCRMNAISGWQAFFPVHFQEFNPALS
PQRSPPGVPGADPPSPGVDPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEV
MDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGARTQLAMALFEQEQANST


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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