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Report for CCDS57601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57601.1 Public Mus musculus 8 Pet100 23 108 98 CCDS HistoryNCBI Gene:100503890Re-query CCDS DB by CCDS ID:57601.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156380.3 ENSMUSP00000137626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156380.3Link to Ensembl Protein Viewer:ENSMUSP00000137626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156380Re-query CCDS DB by Protein ID:ENSMUSP00000137626
Original member Current member EBI ENSMUST00000208950.1 ENSMUSP00000146433.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208950.1Link to Ensembl Protein Viewer:ENSMUSP00000146433.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208950Re-query CCDS DB by Protein ID:ENSMUSP00000146433
Original member Current member NCBI NM_001195244.1 NP_001182173.1 Accepted alive Link to Nucleotide Sequence:NM_001195244.1Link to Protein Sequence:NP_001182173.1Re-query CCDS DB by Nucleotide ID:NM_001195244Re-query CCDS DB by Protein ID:NP_001182173Link to BLAST:NP_001182173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182173.1 76 P0DJE0 76 100% 0 0

Chromosomal Locations for CCDS 57601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3621585 3621611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3622342 3622428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3622593 3622625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3623224 3623307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGGGGGTGAAGCTGGAGGTGTTTCGGATGTCCCTCTACCTCACTTTCCCCGTGGTTATGTTCTGGATCT
CCAATCAGGCTGAGTGGTTTGAGGACTATGTTGTCCAGCGTAAGAGGGAGCTGTGGCCAAGAGAGAAGGA
GGGTCAGCGCCAGGAGCTAGAAGAATTTAAGCAGAAGATCCGGAAGCAGAAAGAAGAGAGACTTCTTCAA
GCTGCCCAGCAGAGCTCCTGA

Translation (76 aa):
MGVKLEVFRMSLYLTFPVVMFWISNQAEWFEDYVVQRKRELWPREKEGQRQELEEFKQKIRKQKEERLLQ
AAQQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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