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Report for CCDS51940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51940.1 Public Mus musculus 6 Ube2q2l 23 108 98 CCDS HistoryNCBI Gene:100502936Re-query CCDS DB by CCDS ID:51940.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058713.7 ENSMUSP00000060726.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058713.7Link to Ensembl Protein Viewer:ENSMUSP00000060726.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058713Re-query CCDS DB by Protein ID:ENSMUSP00000060726
Original member Current member EBI ENSMUST00000204830.1 ENSMUSP00000145343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204830.1Link to Ensembl Protein Viewer:ENSMUSP00000145343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204830Re-query CCDS DB by Protein ID:ENSMUSP00000145343
Original member Current member NCBI NM_001201390.1 NP_001188319.1 Accepted alive Link to Nucleotide Sequence:NM_001201390.1Link to Protein Sequence:NP_001188319.1Re-query CCDS DB by Nucleotide ID:NM_001201390Re-query CCDS DB by Protein ID:NP_001188319Link to BLAST:NP_001188319.1

Chromosomal Locations for CCDS 51940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136400715 136401830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGTCGTCAGGTCTTAAGGCTGAGCTGGAGTTCCTAGCATCCATCTTCCACAAGGACCACGAGCGGCTGC
GCATCGTGAGCTGGCACCTGGATGACCTACAGTGTCAGTTCCTGGTGCCGGAGGCAACTGTGGGCAGTCC
GCCCTCGCCGCCACCGCTCACCCTTCACTGCACCATCACCGAGTCCTACCCATCTTCACCGGCGATGTGG
TTCGTGGACTCTGACGATCCAGATCTCACATCGATCCTGGAACGCCTGGAAAATTCGAAGCCAGACAGTT
CGCTTAGTCAGCAGCTCAAGTGGCTGATCTGTGAACTCTGCCGCTTATATAACCTGCCTGAGCACCTGGA
TGTGGAGATGCTGGACCAGCCGGTCCCCATCGCTCAGAAGGCCACCATCAAAGATGGGTCTTCAGAAGAA
GACGAAGATGCATCTTACGGACTGGACGACTCGGATTATTATGACATGAAAGAAGAAGAGACGAGTAGTG
AGAAAACGTCAGAGAATGAAGGGCTTGAGAAAGAGGATTTGGAAATATTAGAGAATATCCAGAAAAACCT
TTGGCAAAAGAATGCAAGTGGTGCCACGTCTGGCTCAGTGTGTGCTTCAGATAGACTTATGAAAGAACTC
AGAGAAATATACAGATCGCAGAGTTACAAATCAGGGACTTTTTCAGTGGAACTGATAAATGACAGCTTAT
ATGACTGGCACGTTAAACTGAGGAAGGTTGACCCTGATAGTTGCTTGTACAGAGACCTTCAGCGCTTGAA
ACAAAAAGAAGGCATAGACTATATTTTGCTTAACTTCTCTTTCAAAGATAACTTTCCGTTTGATCCTCCA
TTTGTTCGAGTCGTGTTGCCTGTACTCTCTGATGGTTATGTCTTGGATGGGGGGGCATTGTGTATGGAAC
TGCTTACCAATCAGGGCTGGAGCAGCGCCTACTCCATAGAATCGGTCATCTTGCAGATCAATGCCACCTT
AGTCAAAGGCAAGGCCAGGGTGCGCTTTGGAGTAGATAATCACTATACTGAACAAGTGGCTAGACGGGTC
TATAAATCCATGGTGCTGAAGCATGAGAAATCAGGCTGGTTCACTCCTCCACAGAAAGATGGGTAA

Translation (371 aa):
MSSGLKAELEFLASIFHKDHERLRIVSWHLDDLQCQFLVPEATVGSPPSPPPLTLHCTITESYPSSPAMW
FVDSDDPDLTSILERLENSKPDSSLSQQLKWLICELCRLYNLPEHLDVEMLDQPVPIAQKATIKDGSSEE
DEDASYGLDDSDYYDMKEEETSSEKTSENEGLEKEDLEILENIQKNLWQKNASGATSGSVCASDRLMKEL
REIYRSQSYKSGTFSVELINDSLYDWHVKLRKVDPDSCLYRDLQRLKQKEGIDYILLNFSFKDNFPFDPP
FVRVVLPVLSDGYVLDGGALCMELLTNQGWSSAYSIESVILQINATLVKGKARVRFGVDNHYTEQVARRV
YKSMVLKHEKSGWFTPPQKDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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