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Report for CCDS49148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49148.1 Public Mus musculus 12 Gon7 23 108 98 CCDS HistoryNCBI Gene:100233175Re-query CCDS DB by CCDS ID:49148.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173969.1 ENSMUSP00000136425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173969.1Link to Ensembl Protein Viewer:ENSMUSP00000136425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173969Re-query CCDS DB by Protein ID:ENSMUSP00000136425
Original member Current member NCBI NM_001142938.1 NP_001136410.1 Accepted alive Link to Nucleotide Sequence:NM_001142938.1Link to Protein Sequence:NP_001136410.1Re-query CCDS DB by Nucleotide ID:NM_001142938Re-query CCDS DB by Protein ID:NP_001136410Link to BLAST:NP_001136410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136410.1 98 P0C8B4 98 100% 0 0

Chromosomal Locations for CCDS 49148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102754075 102754166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102757541 102757745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGGAGCTTTCGGGCGAGTACGTCGGTTGTGACGGGGAGCCGCAGCGGCTACGAGTGTCCTGTGAGGCGT
CGGGAGACGCGGACCCTCTCCAGAGCCTGTCGGCGGGCGTGGTCCGGATGAAGGAGTTGGTAGCGGAGTT
CTTCGGGACCCTAGTGGAGCAGGACGCGCAAGGCTTGGCGGAAGATCCGGACGACGCTTTGGATGGTGAT
GATGAAGATGATGCAGAAGATGAAAATAACTCTGGTAGAACTAACTCAGATGGACCATCTGCAAAACGTC
CAAAGCCAGCATCTTAA

Translation (98 aa):
MELSGEYVGCDGEPQRLRVSCEASGDADPLQSLSAGVVRMKELVAEFFGTLVEQDAQGLAEDPDDALDGD
DEDDAEDENNSGRTNSDGPSAKRPKPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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