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Report for CCDS4272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4272.1 Public Homo sapiens 5 GNPDA1 24 110 108 CCDS HistoryNCBI Gene:10007Re-query CCDS DB by CCDS ID:4272.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311337.11 ENSP00000311876.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311337.11Link to Ensembl Protein Viewer:ENSP00000311876.6Re-query CCDS DB by Nucleotide ID:ENST00000311337Re-query CCDS DB by Protein ID:ENSP00000311876
Original member Current member EBI ENST00000503794.5 ENSP00000423485.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503794.5Link to Ensembl Protein Viewer:ENSP00000423485.1Re-query CCDS DB by Nucleotide ID:ENST00000503794Re-query CCDS DB by Protein ID:ENSP00000423485
Original member Current member EBI ENST00000508177.5 ENSP00000423674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508177.5Link to Ensembl Protein Viewer:ENSP00000423674.1Re-query CCDS DB by Nucleotide ID:ENST00000508177Re-query CCDS DB by Protein ID:ENSP00000423674
Original member Current member EBI ENST00000500692.6 ENSP00000424275.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000500692.6Link to Ensembl Protein Viewer:ENSP00000424275.1Re-query CCDS DB by Nucleotide ID:ENST00000500692Re-query CCDS DB by Protein ID:ENSP00000424275
Original member Current member NCBI NM_005471.5 NP_005462.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005471.5Link to Protein Sequence:NP_005462.1Re-query CCDS DB by Nucleotide ID:NM_005471Re-query CCDS DB by Protein ID:NP_005462Link to BLAST:NP_005462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005462.1 289 P46926-1 289 100% 0 0

Chromosomal Locations for CCDS 4272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142002029 142002129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142003088 142003262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142004932 142005116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142006144 142006326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142007799 142007900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142011912 142012035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGAAGCTCATCATCCTGGAGCACTATTCTCAGGCGAGCGAGTGGGCGGCTAAATACATCAGGAACCGCA
TCATCCAGTTTAACCCAGGGCCAGAGAAGTACTTCACCCTGGGGCTCCCCACTGGGAGTACCCCACTTGG
CTGCTACAAGAAGCTGATTGAATACTATAAGAATGGGGACCTGTCCTTTAAATATGTGAAGACCTTCAAC
ATGGATGAGTACGTGGGCCTTCCTCGAGACCACCCGGAGAGTTACCACTCCTTCATGTGGAACAACTTCT
TCAAGCACATTGACATCCACCCAGAAAACACCCACATTCTGGATGGGAATGCAGTCGACCTACAGGCAGA
ATGTGATGCCTTTGAAGAGAAGATCAAGGCTGCAGGTGGGATCGAGCTATTTGTTGGAGGCATCGGCCCT
GATGGACACATTGCCTTCAACGAGCCAGGCTCCAGTCTGGTGTCCAGGACCCGTGTGAAGACGCTGGCCA
TGGATACCATCCTGGCCAATGCTAGGTTCTTCGATGGAGAACTCACCAAGGTGCCCACCATGGCCTTGAC
GGTGGGGGTGGGCACTGTCATGGATGCTAGAGAGGTGATGATCCTTATCACAGGTGCTCACAAGGCATTT
GCTCTGTACAAGGCCATCGAGGAGGGAGTGAACCACATGTGGACCGTGTCTGCCTTCCAGCAGCATCCCC
GCACCGTGTTTGTGTGTGACGAGGATGCCACCTTGGAGCTGAAAGTGAAGACTGTCAAGTATTTCAAAGG
TTTAATGCTTGTTCATAACAAGTTGGTGGACCCCTTGTACAGTATCAAAGAGAAAGAAACTGAGAAAAGC
CAATCTTCGAAGAAACCATACAGCGATTAG

Translation (289 aa):
MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFN
MDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGP
DGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAF
ALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKS
QSSKKPYSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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