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Report for CCDS48451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48451.1 Public Mus musculus 1 Ifi208 23 108 98 CCDS HistoryNCBI Gene:100033459Re-query CCDS DB by CCDS ID:48451.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085876.11 ENSMUSP00000083039.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085876.11Link to Ensembl Protein Viewer:ENSMUSP00000083039.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085876Re-query CCDS DB by Protein ID:ENSMUSP00000083039
Original member Current member EBI ENSMUST00000169857.1 ENSMUSP00000128958.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169857.1Link to Ensembl Protein Viewer:ENSMUSP00000128958.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169857Re-query CCDS DB by Protein ID:ENSMUSP00000128958
Original member NCBI NM_001162938.1 NP_001156410.1 Updated not alive Link to Nucleotide Sequence:NM_001162938.1Link to Protein Sequence:NP_001156410.1Re-query CCDS DB by Nucleotide ID:NM_001162938Re-query CCDS DB by Protein ID:NP_001156410
Current member NCBI NM_001162938.2 NP_001156410.1 Accepted alive Link to Nucleotide Sequence:NM_001162938.2Link to Protein Sequence:NP_001156410.1Re-query CCDS DB by Nucleotide ID:NM_001162938Re-query CCDS DB by Protein ID:NP_001156410Link to BLAST:NP_001156410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156410.1 588 Q3V3Q4 588 100% 0 0

Chromosomal Locations for CCDS 48451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173677686 173677962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173678930 173679036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173682665 173683618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173690667 173690734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173695572 173695869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173697405 173697467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGACTGGAGAGATGGTGAATTACTACAAGCAAATTGTTCTTCTGTCTGGATTAGAATATATGAATGACT
ATAACTTTAGAGCACTTAAGTCCTTACTGAACCATGACCTAAAACTGACTAAGAACATGCAAGATGATTA
TGACAGAATTAAGATTGCTGACTTAATGGAAGAAAAGTTCCCAGAGGATGCTGGATTGAGCAAACTGATA
GAAGTATGTGAAGACATTCCAGAACTTGCAGCTCGTGTTGATATACTTAGAAAAGAGATGGAGAAAGTTA
AAAATAAAACCAAAATAAAATCGGAATCCAGTCCTCTCCCACTTACCTCCAGCCTGATGGAAGCTTGGGA
AGTAGAACCAGCTATGGTGACAGCTTCATCAGAGGAAAGCAAAGATACTATCCCTGAATCACCTGATACC
ATGACAACACAGTTTTTGGAGGAAAAGCCTAAGTTTCCATTACTTTCAGCAACCAGCACAAGCCAGGCTG
AGGGTGAACCACTGACTCCCCAGAGGTTTCCAACAACAGCCTCCAGCAGTCTCCAGACACCCCTGGAGCC
TACAGAAATATTGTCCACCATATTGGCAACATCTCAGGGTTCTTCAGCACCATATTCCACCTGTGACAAA
TCTTCTCGGGTGCCTCCAGTGACAGTCTCCAGCAGCCTCCAGACCATCCAGACCTGTCAGGCAACCTCAA
CACTTCCTTGTAGTCACCACACTTCTCTGGAGTCTCCAAAAACAGAGCCCAGCAGTGTCCAGGCCACTCA
GATGACTCAAGCAATAAAGGCAAGTGGTCATAATTGTCCTCAGGTGCCTGCATCAGCAGTATCCAGCAGT
TTCATTAAACCTCAGGTGACCCCAGCAATGTTACTCAGCGGTGTCCAAACTCCTTTGATGCCTCAAGCAA
CAGTGCCCAGCCGTGCCCAGACCTTTCAACTAACCCCAGCAAAAATGACCAGTGGTTGTAATAGTCCTCA
GATGTCTGCAGCAACAGTATACAGCAGTTACAGTAACCCTCAGGTGACTCCAGTGCACAGCAGTGTCCAG
ATCTTGCAAATGAACCTAGCAGCAATGACCATTGGTTGTAATAGTCCTCATGTATCTGCAGCAACAGTAT
CCAGCCCTTACAATAACCCTTGGGTGACTCCAGCAACATTTCCCCGAAATGCCCAGACCTTGCAACTCTA
CCCAGCAGCCATGGCCCATGCCTGTAATAGTCCTCAGGTGTCTGCAGCAACAATATCCAGCAGTTACAAT
AATACCCCTCAGGTGTCTTCTGTAACAGTGCCCAGGAGTTTTCCTGCCATGTCTCTGTCTCCAGCAAAGC
CACTCAAGGCAAAGATAGGATCTCATCTGGGTGCTACAGACCAGCTGGTAAAGGATCACCAGTTTGAGGA
CAATGAAATGCAGAATCCCCAGTCTGGATTAGGGACAGGCTTATCAGATCAGCCCCGCCTGTCCCGAACA
CAAAGCCGCACAGAGAAGAGAAGGAGAAAGCAGGAAGAACAGCCGCTTGCAACCAAAATGAAGAGACTCT
CCCTATCTCCACCACAGACAACAGCAAGGAGAGTCAACCCGATGCCAACCTGGGGACAACTAAAGAAGCT
GACTCGTGAGGCGGAGGGACTAGTACAGAGAACGGGCAACAAGCTTTCATCAGAGACAATGTTTTTGGCC
ATGCTTGCTTTAATAGCTATGCAGAGTTCTTCTGAGATTTGTAACTACGACAAGGGAGGACATTCTGGAA
CTTCATCTGAAAAATAA

Translation (588 aa):
MTGEMVNYYKQIVLLSGLEYMNDYNFRALKSLLNHDLKLTKNMQDDYDRIKIADLMEEKFPEDAGLSKLI
EVCEDIPELAARVDILRKEMEKVKNKTKIKSESSPLPLTSSLMEAWEVEPAMVTASSEESKDTIPESPDT
MTTQFLEEKPKFPLLSATSTSQAEGEPLTPQRFPTTASSSLQTPLEPTEILSTILATSQGSSAPYSTCDK
SSRVPPVTVSSSLQTIQTCQATSTLPCSHHTSLESPKTEPSSVQATQMTQAIKASGHNCPQVPASAVSSS
FIKPQVTPAMLLSGVQTPLMPQATVPSRAQTFQLTPAKMTSGCNSPQMSAATVYSSYSNPQVTPVHSSVQ
ILQMNLAAMTIGCNSPHVSAATVSSPYNNPWVTPATFPRNAQTLQLYPAAMAHACNSPQVSAATISSSYN
NTPQVSSVTVPRSFPAMSLSPAKPLKAKIGSHLGATDQLVKDHQFEDNEMQNPQSGLGTGLSDQPRLSRT
QSRTEKRRRKQEEQPLATKMKRLSLSPPQTTARRVNPMPTWGQLKKLTREAEGLVQRTGNKLSSETMFLA
MLALIAMQSSSEICNYDKGGHSGTSSEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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