NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9423.1 Public Homo sapiens 13 TRIM13 24 110 108 CCDS HistoryNCBI Gene:10206Re-query CCDS DB by CCDS ID:9423.1Re-query CCDS DB by GeneID:10206See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9423.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378182.4 ENSP00000367424.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378182.4Link to Ensembl Protein Viewer:ENSP00000367424.3Re-query CCDS DB by Nucleotide ID:ENST00000378182Re-query CCDS DB by Protein ID:ENSP00000367424
Original member Current member EBI ENST00000457662.2 ENSP00000399206.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457662.2Link to Ensembl Protein Viewer:ENSP00000399206.2Re-query CCDS DB by Nucleotide ID:ENST00000457662Re-query CCDS DB by Protein ID:ENSP00000399206
Original member Current member EBI ENST00000420995.6 ENSP00000412943.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420995.6Link to Ensembl Protein Viewer:ENSP00000412943.2Re-query CCDS DB by Nucleotide ID:ENST00000420995Re-query CCDS DB by Protein ID:ENSP00000412943
Original member Current member NCBI NM_005798.5 NP_005789.2 Accepted alive Link to Nucleotide Sequence:NM_005798.5Link to Protein Sequence:NP_005789.2Re-query CCDS DB by Nucleotide ID:NM_005798Re-query CCDS DB by Protein ID:NP_005789Link to BLAST:NP_005789.2
Original member Current member NCBI NM_052811.4 NP_434698.1 Accepted alive Link to Nucleotide Sequence:NM_052811.4Link to Protein Sequence:NP_434698.1Re-query CCDS DB by Nucleotide ID:NM_052811Re-query CCDS DB by Protein ID:NP_434698Link to BLAST:NP_434698.1
Original member Current member NCBI NM_213590.3 NP_998755.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213590.3Link to Protein Sequence:NP_998755.1Re-query CCDS DB by Nucleotide ID:NM_213590Re-query CCDS DB by Protein ID:NP_998755Link to BLAST:NP_998755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005789.2 407 O60858-1 407 100% 0 0
NP_434698.1 407 O60858-1 407 100% 0 0
NP_998755.1 407 O60858-1 407 100% 0 0

Chromosomal Locations for CCDS 9423.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 50011941 50013164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGAGCTGCTTGAAGAAGATCTCACATGCCCTATTTGTTGTAGTCTGTTTGATGATCCACGGGTTTTGC
CTTGCTCCCACAACTTCTGCAAAAAATGCTTAGAAGGTATCTTAGAAGGGAGTGTGCGGAATTCCTTGTG
GAGACCAGCTCCATTCAAGTGTCCTACATGCCGTAAGGAAACTTCAGCTACTGGAATTAATAGCCTGCAG
GTTAATTACTCCCTGAAGGGTATTGTGGAAAAGTATAACAAGATCAAGATCTCTCCCAAAATGCCAGTAT
GCAAAGGACACTTGGGGCAGCCTCTCAACATTTTCTGCCTGACTGATATGCAGCTGATTTGTGGGATCTG
TGCTACTCGTGGGGAGCACACCAAACATGTCTTCTGTTCTATTGAAGATGCCTATGCTCAGGAAAGGGAT
GCCTTTGAGTCCCTCTTCCAGAGCTTTGAGACCTGGCGTCGGGGAGATGCTCTTTCTCGCTTGGATACCT
TGGAAACTAGTAAGAGGAAATCCCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGAATTTTTTGA
GAAGTTACAACACACACTGGATCAAAAGAAGAATGAAATTCTGTCTGACTTTGAGACCATGAAACTTGCT
GTTATGCAAGCATATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAGCAACGGATGGCCTTTA
ACATTGCTGAGGCTTTCAAAGATGTGTCAGAACCCATTGTATTTCTGCAACAGATGCAGGAGTTTAGAGA
GAAAATCAAAGTAATCAAGGAAACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCTTTAATGAAGAAC
TTTGATACCAGTCAGTGGGAAGACATAAAACTAGTCGATGTGGATAAACTTTCTTTGCCTCAAGACACTG
GCACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTAATCCTTCTGCTTGGCCTTGT
CATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTGGCAACTTGGAAAGGCTGT
CTTTCAAACTTCAGTTCCTATCTGACTAAAACAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAAC
AGGTGACAGATGGGTTTTTCATTTTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGT
GGCAGAATTTGTGTGCAAATATAAACTATTATAA

Translation (407 aa):
MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETSATGINSLQ
VNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATRGEHTKHVFCSIEDAYAQERD
AFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLA
VMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPLMKN
FDTSQWEDIKLVDVDKLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGC
LSNFSSYLTKTADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH