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Report for CCDS94015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94015.1 Public Homo sapiens 6 PHACTR2 24 110 108 CCDS HistoryNCBI Gene:9749Re-query CCDS DB by CCDS ID:94015.1Re-query CCDS DB by GeneID:9749See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94015.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367584.8 ENSP00000356556.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367584.8Link to Ensembl Protein Viewer:ENSP00000356556.4Re-query CCDS DB by Nucleotide ID:ENST00000367584Re-query CCDS DB by Protein ID:ENSP00000356556
Original member Current member NCBI NM_001394736.1 NP_001381665.1 Accepted alive Link to Nucleotide Sequence:NM_001394736.1Link to Protein Sequence:NP_001381665.1Re-query CCDS DB by Nucleotide ID:NM_001394736Re-query CCDS DB by Protein ID:NP_001381665Link to BLAST:NP_001381665.1

Chromosomal Locations for CCDS 94015.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143536991 143537207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143712016 143712183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143748985 143749065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143753754 143753912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143765261 143765798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143772258 143772457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143774059 143774215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143777328 143777383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143783219 143783280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143788773 143788910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143807057 143807133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143823674 143823689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGCCGAGGCGGGCTGGCGCCCCGCGGCGTCCCCGGTCGATCCGGCCGGGCAGGCGGCGGCGGTCCCAG
TCCCCGAGCCCGAGGCGCCCGCCCCGCCGGCGGCGCCTGCCCTGCGCTGGCTTCCCGGGGACCCGAGCCC
CCGCGGCCGCTCACAGAGCGACCTCTCGTCGTCCTCGAGCAGGGGCCGCCCGCTCCGGGTCCACATCTCC
GGCTCAGTTGACGGACTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACAC
CTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAA
GAAGACCAGCGACAAATTTAGAGAAACCTCGGCAGTATTAGAAAGGAAGATATCCACACGACAAAGTAGA
GAGGAGCTGATAAGAAGGGGAGTGCTTAAGGAATTGCCTGATCAAGATGGAGATGTAACAGTTAACTTTG
AAAATTCAAACGGGCACATGATACCCATCGGAGAGGAATCTACCCGAGAGGAAAATGTAGTAAAGTCTGA
AGAAGGTAATGGCTCTGTATCTGAAAAAACACCACCTCTGGAGGAACAGGCAGAAGATAAGAAAGCTGGC
TCCTCTCATTCAAAAAAAACAACTGGCTCTAAAGCATCAGCTTCGCCATCCACTTCATCCACCTCATCTC
GTCCCAAAGCTTCAAAGGAGACAGTTTCTAGCAAAGCAGGGACAGTGGGGACCACCAAGGGCAAGAGAAA
AACTGACAAGCAGCCAATAACTTCTCACCTGTCCTCAGACACAACAACTTCTGGCACATCCGACCTGAAA
GGAGAGCCTGCAGAGACCAGAGTGGAGAGTTTCAAACTCGAACAGACTGTCCCTGGAGCTGAGGAGCAGA
ACACAGGCAAATTCAAGTCCATGGTCCCTCCACCCCCTGTGGCTCCAGCACCTTCTCCTCTGGCCCCCCC
TCTCCCTCTTGAGGATCAGTGCATTACTGCCTCAGACACTCCAGTTGTCCTCGTCAGCGTTGGAGCTGAC
CTGCCCGTCTCTGCCTTAGACCCAAGTCAGCTTCTTTGGGCTGAAGAGCCGACGAACAGAACCACTCTCT
ACTCAGGCACTGGCTTAAGTGTTAACAGAGAAAATGCAAAATGTTTCACAACCAAAGAGGAGCTGGGGAA
GACAGTGCCTCAGCTACTGACTCCTGGGCTGATGGGCGAATCTTCAGAATCCTTTAGTGCCTCAGAAGAT
GAAGGCCACAGGGAATACCAAGCCAATGACTCTGACTCGGACGGGCCTATCTTGTACACCGATGATGAGG
ACGAAGACGAAGATGAGGATGGCAGTGGAGAAAGTGCTTTGGCAAGTAAAATACGCCGGAGGGATACTCT
TGCTATCAAACTTGGCAACAGACCATCTAAGAAAGAACTAGAGGACAAAAACATCTTGCAGCGTACATCT
GAAGAAGAGAGGCAGGAAATCCGACAACAAATTGGAACCAAGTTAGTCAGGAGGCTGAGCCAGAGGCCCA
CAACTGAAGAATTAGAGCAAAGAAACATCCTAAAACAAAAGAATGAAGAAGAGGAACAAGAAGCAAAAAT
GGAACTTAAACGCAGACTCAGCAGAAAGCTCAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGG
ATCCTGCGATTTAACGAGTATGTAGAAGTCACGGATTCTCCTGACTATGACCGCCGAGCAGACAAGCCCT
GGGCCAGGTTAACACCTGCAGACAAGGCAGCAATAAGGAAAGAACTAAATGAATTTAAAAGCACAGAAAT
GGAAGTTCATGAAGAGAGTCGACAGTTTACAAGGTTTCATCGTCCATAA

Translation (622 aa):
MAEAGWRPAASPVDPAGQAAAVPVPEPEAPAPPAAPALRWLPGDPSPRGRSQSDLSSSSSRGRPLRVHIS
GSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSR
EELIRRGVLKELPDQDGDVTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKTPPLEEQAEDKKAG
SSHSKKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTKGKRKTDKQPITSHLSSDTTTSGTSDLK
GEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAPPLPLEDQCITASDTPVVLVSVGAD
LPVSALDPSQLLWAEEPTNRTTLYSGTGLSVNRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASED
EGHREYQANDSDSDGPILYTDDEDEDEDEDGSGESALASKIRRRDTLAIKLGNRPSKKELEDKNILQRTS
EEERQEIRQQIGTKLVRRLSQRPTTEELEQRNILKQKNEEEEQEAKMELKRRLSRKLSLRPTVAELQARR
ILRFNEYVEVTDSPDYDRRADKPWARLTPADKAAIRKELNEFKSTEMEVHEESRQFTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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