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Report for CCDS93257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93257.1 Public Homo sapiens 3 SACM1L 24 110 108 CCDS HistoryNCBI Gene:22908Re-query CCDS DB by CCDS ID:93257.1Re-query CCDS DB by GeneID:22908See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93257.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000672858.2 ENSP00000500542.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672858.2Link to Ensembl Protein Viewer:ENSP00000500542.2Re-query CCDS DB by Nucleotide ID:ENST00000672858Re-query CCDS DB by Protein ID:ENSP00000500542
Original member Current member NCBI NM_001319071.2 NP_001306000.1 Accepted alive Link to Nucleotide Sequence:NM_001319071.2Link to Protein Sequence:NP_001306000.1Re-query CCDS DB by Nucleotide ID:NM_001319071Re-query CCDS DB by Protein ID:NP_001306000Link to BLAST:NP_001306000.1

Chromosomal Locations for CCDS 93257.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45689466 45689497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45703438 45703535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45705135 45705209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45706780 45706907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45709498 45709647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45713137 45713196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45714046 45714079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45719500 45719601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45722000 45722085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45722869 45722955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45723475 45723543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45731301 45731380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45732053 45732151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45735235 45735373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45737583 45737652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45737772 45737844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45738578 45738671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45738781 45738873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45739587 45739644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45743533 45743735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with X at amino acid position 588

Nucleotide Sequence (1830 nt):
ATGGCGACGGCGGCCTACGAGCAGCTGAAGCTGCATATCACACCTGAAAAATTTTATGTGGAAGCTTGTG
ATGATGGAGCAGATGACGTACTTACCATTGACCGTGTGTCCACAGAGGTTACCCTTGCAGTCAAGAAAGA
TGTTCCTCCTTCAGCTGTCACAAGACCAATATTTGGTATACTGGGCACAATCCATCTGGTGGCAGGTAAT
TATCTTATAGTCATTACCAAAAAGATAAAAGTAGGTGAATTTTTCAGTCATGTAGTCTGGAAAGCAACAG
ATTTTGATGTCCTTTCTTATAAGAAGACAATGTTGCACTTAACTGATATTCAGTTACAAGATAATAAAAC
CTTCCTAGCGATGCTAAACCATGTCTTGAATGTGGATGGATTTTACTTTTCAACAACATATGATTTGACC
CATACTTTGCAGCGGCTATCCAACACTAGTCCTGAATTCCAAGAAATGAGTCTCTTGGAAAGGGCAGATC
AGCGGTTTGTATGGAATGGTCATCTTCTAAGAGAACTTTCTGCACAGCCAGAGGTTCATCGGTTTGCCCT
TCCAGTGTTACATGGCTTTATTACCATGCATTCATGTTCTATTAATGGAAAATACTTTGATTGGATTCTC
ATCTCGAGGAGGAGCTGTTTCAGAGCTGGTGTGCGCTATTATGTAAGAGGAATTGATTCGGAAGGCCATG
CAGCTAACTTTGTAGAAACAGAACAAATTGTGCACTACAATGGGAGCAAAGCTTCGTTTGTACAGACTCG
AGGATCAATACCTGTTTTCTGGTCCCAAAGACCAAACCTCAAGTACAAACCACTGCCACAGATCAGCAAA
GTAGCAAATCACATGGACGGTTTCCAAAGGCATTTTGATTCCCAAGTAATTATTTATGGAAAACAAGTTA
TAATCAATCTGATTAACCAGAAGGGCTCGGAGAAGCCACTTGAGCAGACATTTGCAACAATGGTGTCTTC
CTTGGGAAGTGGAATGATGAGATACATTGCCTTTGACTTCCATAAGGAATGTAAAAATATGAGATGGGAT
CGACTAAGTATTTTATTGGATCAGGTAGCAGAAATGCAAGATGAATTAAGTTATTTTCTAGTGGACTCTG
CTGGCCAGGTGGTGGCAAACCAGGAAGGCGTGTTCCGAAGCAATTGCATGGATTGTCTAGATAGAACCAA
TGTGATCCAGAGTTTGTTAGCTCGTCGTTCACTTCAGGCCCAACTTCAGAGACTAGGAGTTTTGCATGTG
GGACAAAAGCTTGAAGAACAAGATGAATTTGAGAAGATTTACAAAAATGCCTGGGCTGACAACGCAAATG
CTTGTGCCAAGCAATATGCGGGAACTGGTGCCTTGAAGACTGACTTTACCAGAACTGGAAAGAGAACTCA
TTTGGGACTTATAATGGATGGCTGGAACTCAATGATACGATATTATAAGAACAACTTTTCCGATGGATTT
AGACAAGATTCCATAGACTTATTTCTTGGAAACTATTCAGTGGATGAATTAGAATCTCATAGTCCTTTAA
GTGTTCCAAGGGACTGGAAATTCCTGGCTTTGCCTATTATCATGGTTGTTGCCTTTTCAATGTGCATTAT
CTGTTTGCTTATGGCTGGTGACACTTGGACAGAAACACTGGCCTATGTGCTCTTCTGGGGAGTTGCAAGC
ATTGGAACATTTTTTATCATTCTTTACAATGGCAAAGATTTTGTCGATGCTCCCAGACTGGTCCAGAAAG
AAAAGATAGACTGAATTTGTATTTGTGGAAAGCGGCTTGGCTTGGAAGATTCCATTGTGCAGAACTGGAG
TCTTTACTGA

Translation (609 aa):
MATAAYEQLKLHITPEKFYVEACDDGADDVLTIDRVSTEVTLAVKKDVPPSAVTRPIFGILGTIHLVAGN
YLIVITKKIKVGEFFSHVVWKATDFDVLSYKKTMLHLTDIQLQDNKTFLAMLNHVLNVDGFYFSTTYDLT
HTLQRLSNTSPEFQEMSLLERADQRFVWNGHLLRELSAQPEVHRFALPVLHGFITMHSCSINGKYFDWIL
ISRRSCFRAGVRYYVRGIDSEGHAANFVETEQIVHYNGSKASFVQTRGSIPVFWSQRPNLKYKPLPQISK
VANHMDGFQRHFDSQVIIYGKQVIINLINQKGSEKPLEQTFATMVSSLGSGMMRYIAFDFHKECKNMRWD
RLSILLDQVAEMQDELSYFLVDSAGQVVANQEGVFRSNCMDCLDRTNVIQSLLARRSLQAQLQRLGVLHV
GQKLEEQDEFEKIYKNAWADNANACAKQYAGTGALKTDFTRTGKRTHLGLIMDGWNSMIRYYKNNFSDGF
RQDSIDLFLGNYSVDELESHSPLSVPRDWKFLALPIIMVVAFSMCIICLLMAGDTWTETLAYVLFWGVAS
IGTFFIILYNGKDFVDAPRLVQKEKIDXICICGKRLGLEDSIVQNWSLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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