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Report for CCDS9292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9292.1 Public Homo sapiens 13 IL17D 24 110 108 CCDS HistoryNCBI Gene:53342Re-query CCDS DB by CCDS ID:9292.1Re-query CCDS DB by GeneID:53342See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304920.3 ENSP00000302924.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304920.3Link to Ensembl Protein Viewer:ENSP00000302924.3Re-query CCDS DB by Nucleotide ID:ENST00000304920Re-query CCDS DB by Protein ID:ENSP00000302924
Original member Current member EBI ENST00000682841.1 ENSP00000508385.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682841.1Link to Ensembl Protein Viewer:ENSP00000508385.1Re-query CCDS DB by Nucleotide ID:ENST00000682841Re-query CCDS DB by Protein ID:ENSP00000508385
Original member Current member NCBI NM_001385223.1 NP_001372152.1 Accepted alive Link to Nucleotide Sequence:NM_001385223.1Link to Protein Sequence:NP_001372152.1Re-query CCDS DB by Nucleotide ID:NM_001385223Re-query CCDS DB by Protein ID:NP_001372152Link to BLAST:NP_001372152.1
Original member Current member NCBI NM_001385224.1 NP_001372153.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385224.1Link to Protein Sequence:NP_001372153.1Re-query CCDS DB by Nucleotide ID:NM_001385224Re-query CCDS DB by Protein ID:NP_001372153Link to BLAST:NP_001372153.1
Original member Current member NCBI NM_138284.2 NP_612141.1 Accepted alive Link to Nucleotide Sequence:NM_138284.2Link to Protein Sequence:NP_612141.1Re-query CCDS DB by Nucleotide ID:NM_138284Re-query CCDS DB by Protein ID:NP_612141Link to BLAST:NP_612141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372152.1 202 Q8TAD2 202 100% 0 0
NP_001372153.1 202 Q8TAD2 202 100% 0 0
NP_612141.1 202 Q8TAD2 202 100% 0 0

Chromosomal Locations for CCDS 9292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 20704002 20704291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20721636 20721954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGCTGGTAGCCGGCTTCCTGCTGGCGCTGCCGCCGAGCTGGGCCGCGGGCGCCCCGAGGGCGGGCAGGC
GCCCCGCGCGGCCGCGGGGCTGCGCGGACCGGCCGGAGGAGCTACTGGAGCAGCTGTACGGGCGCCTGGC
GGCCGGCGTGCTCAGTGCCTTCCACCACACGCTGCAGCTGGGGCCGCGTGAGCAGGCGCGCAACGCGAGC
TGCCCGGCAGGGGGCAGGCCCGCCGACCGCCGCTTCCGGCCGCCCACCAACCTGCGCAGCGTGTCGCCCT
GGGCCTACAGAATCTCCTACGACCCGGCGAGGTACCCCAGGTACCTGCCTGAAGCCTACTGCCTGTGCCG
GGGCTGCCTGACCGGGCTGTTCGGCGAGGAGGACGTGCGCTTCCGCAGCGCCCCTGTCTACATGCCCACC
GTCGTCCTGCGCCGCACCCCCGCCTGCGCCGGCGGCCGTTCCGTCTACACCGAGGCCTACGTCACCATCC
CCGTGGGCTGCACCTGCGTCCCCGAGCCGGAGAAGGACGCAGACAGCATCAACTCCAGCATCGACAAACA
GGGCGCCAAGCTCCTGCTGGGCCCCAACGACGCGCCCGCTGGCCCCTGA

Translation (202 aa):
MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQLGPREQARNAS
CPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPT
VVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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