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Report for CCDS9115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9115.1 Public Homo sapiens 12 PRDM4 24 110 108 CCDS HistoryNCBI Gene:11108Re-query CCDS DB by CCDS ID:9115.1Re-query CCDS DB by GeneID:11108See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228437.10 ENSP00000228437.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000228437.10Link to Ensembl Protein Viewer:ENSP00000228437.5Re-query CCDS DB by Nucleotide ID:ENST00000228437Re-query CCDS DB by Protein ID:ENSP00000228437
Original member Current member NCBI NM_012406.4 NP_036538.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012406.4Link to Protein Sequence:NP_036538.3Re-query CCDS DB by Nucleotide ID:NM_012406Re-query CCDS DB by Protein ID:NP_036538Link to BLAST:NP_036538.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036538.3 801 Q9UKN5 801 100% 0 0

Chromosomal Locations for CCDS 9115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 107734210 107734522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107739383 107739551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107740946 107741260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107742221 107742348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107743197 107743282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107744543 107744661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107746275 107746424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107751415 107752209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107753924 107754109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107756832 107756965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 107760505 107760515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGCATCACAGGATGAATGAAATGAACCTGAGTCCAGTGGGGATGGAGCAGCTGACTTCATCCTCTGTGA
GCAATGCCTTGCCAGTCTCAGGAAGTCACCTGGGATTGGCTGCCTCACCCACTCACAGTGCCATCCCTGC
CCCAGGCCTCCCAGTGGCAATTCCAAACCTGGGTCCCTCCCTGAGCTCTCTGCCTTCTGCTCTGTCTTTA
ATGCTACCAATGGGTATTGGGGATCGAGGGGTGATGTGTGGGTTACCTGAAAGAAACTACACCCTACCTC
CACCACCTTACCCTCACCTGGAGAGCAGTTATTTCAGAACCATTCTACCTGGCATTTTATCTTATTTAGC
TGACAGACCACCTCCACAGTACATCCACCCTAACTCTATAAATGTTGATGGTAATACAGCATTATCTATC
ACCAATAACCCTTCAGCACTAGATCCCTATCAGTCCAATGGAAATGTTGGATTAGAACCAGGCATTGTTT
CAATAGACTCTCGCTCTGTGAACACACATGGTGCCCAAAGTCTTCATCCCAGTGATGGCCATGAGGTGGC
CTTGGACACAGCAATCACTATGGAGAACGTTTCTAGGGTTACCAGCCCAATTTCGACAGATGGAATGGCA
GAGGAGCTTACGATGGACGGTGTTGCAGGCGAGCATTCCCAAATCCCAAATGGCTCCAGAAGTCATGAAC
CTCTGTCTGTGGATTCTGTGAGCAACAACCTTGCAGCAGACGCTGTAGGACATGGTGGTGTGATACCCAT
GCATGGGAATGGCCTGGAGCTCCCTGTGGTCATGGAGACAGACCACATTGCAAGTCGGGTCAATGGCATG
TCTGACAGTGCCCTCAGTGACTCCATTCACACTGTGGCCATGAGCACCAACTCTGTAAGCGTGGCACTCT
CTACCTCACACAACCTTGCCTCCCTAGAATCTGTTTCCCTCCATGAAGTTGGCCTCAGCCTAGAACCTGT
GGCTGTCTCCTCCATCACCCAGGAGGTTGCTATGGGGACAGGTCATGTAGATGTATCTTCAGACAGTCTT
TCTTTTGTATCACCTTCACTGCAAATGGAAGACTCCAATTCAAACAAGGAGAACATGGCAACCTTGTTTA
CAATTTGGTGTACTCTGTGTGACCGCGCCTATCCCTCGGACTGTCCCGAACATGGACCAGTGACTTTTGT
TCCTGACACTCCAATAGAGAGCAGAGCAAGGCTTTCTCTCCCAAAGCAGCTTGTTCTCCGTCAGTCAATT
GTGGGAGCAGAAGTTGGTGTATGGACTGGAGAAACCATTCCTGTGCGGACTTGCTTTGGACCTCTAATTG
GCCAGCAGAGTCACTCCATGGAAGTAGCAGAATGGACAGACAAGGCAGTTAACCATATCTGGAAGATATA
CCACAATGGTGTCCTAGAATTCTGCATCATTACAACTGATGAAAATGAATGTAATTGGATGATGTTTGTG
CGCAAAGCCAGGAACCGGGAAGAGCAGAATTTGGTGGCTTATCCTCATGATGGAAAAATCTTTTTCTGCA
CCTCACAAGATATCCCTCCTGAAAATGAACTGCTTTTTTATTATAGCCGAGATTATGCTCAACAGATTGG
TGTTCCTGAACACCCAGATGTGCATCTCTGTAACTGTGGCAAGGAGTGCAATTCTTACACAGAGTTCAAA
GCCCATCTGACCAGCCACATCCATAACCATCTTCCTACCCAGGGACATAGCGGCAGCCATGGGCCAAGTC
ACAGCAAAGAAAGGAAGTGGAAGTGCTCAATGTGCCCCCAAGCTTTTATCTCTCCTTCCAAACTTCATGT
CCACTTTATGGGTCACATGGGTATGAAGCCCCACAAGTGTGATTTCTGTAGCAAGGCTTTTAGTGATCCC
AGCAACCTGCGGACCCACCTCAAGATACATACAGGTCAGAAGAACTACAGGTGTACCTTGTGTGACAAGT
CTTTCACCCAGAAGGCTCACCTGGAGTCCCACATGGTTATCCACACTGGGGAGAAGAATCTTAAGTGTGA
TTACTGTGACAAGTTGTTTATGCGGAGGCAGGACCTCAAGCAGCACGTGCTCATCCACACTCAAGAACGC
CAGATCAAGTGTCCCAAGTGTGATAAGCTGTTCTTGAGAACAAATCACTTAAAGAAGCATCTCAATTCTC
ATGAAGGAAAACGGGATTATGTCTGTGAAAAATGTACAAAGGCTTATCTAACCAAATACCATCTCACCCG
CCACCTGAAAACCTGCAAAGGGCCCACCTCCAGTTCGTCAGCACCAGAGGAGGAAGAAGAGGATGACTCA
GAAGAGGAAGATCTAGCAGACTCTGTGGGGACAGAAGACTGTAGGATTAACAGTGCTGTGTATTCAGCGG
ATGAGTCTCTTTCTGCACATAAATAA

Translation (801 aa):
MHHRMNEMNLSPVGMEQLTSSSVSNALPVSGSHLGLAASPTHSAIPAPGLPVAIPNLGPSLSSLPSALSL
MLPMGIGDRGVMCGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNTALSI
TNNPSALDPYQSNGNVGLEPGIVSIDSRSVNTHGAQSLHPSDGHEVALDTAITMENVSRVTSPISTDGMA
EELTMDGVAGEHSQIPNGSRSHEPLSVDSVSNNLAADAVGHGGVIPMHGNGLELPVVMETDHIASRVNGM
SDSALSDSIHTVAMSTNSVSVALSTSHNLASLESVSLHEVGLSLEPVAVSSITQEVAMGTGHVDVSSDSL
SFVSPSLQMEDSNSNKENMATLFTIWCTLCDRAYPSDCPEHGPVTFVPDTPIESRARLSLPKQLVLRQSI
VGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLEFCIITTDENECNWMMFV
RKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGVPEHPDVHLCNCGKECNSYTEFK
AHLTSHIHNHLPTQGHSGSHGPSHSKERKWKCSMCPQAFISPSKLHVHFMGHMGMKPHKCDFCSKAFSDP
SNLRTHLKIHTGQKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHTQER
QIKCPKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPTSSSSAPEEEEEDDS
EEEDLADSVGTEDCRINSAVYSADESLSAHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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