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Report for CCDS90690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90690.1 Public Mus musculus 9 Tmem42 23 108 98 CCDS HistoryNCBI Gene:66079Re-query CCDS DB by CCDS ID:90690.1Re-query CCDS DB by GeneID:66079See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213514.1 ENSMUSP00000149571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213514.1Link to Ensembl Protein Viewer:ENSMUSP00000149571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213514Re-query CCDS DB by Protein ID:ENSMUSP00000149571
Original member Current member NCBI NM_001164823.1 NP_001158295.1 Accepted alive Link to Nucleotide Sequence:NM_001164823.1Link to Protein Sequence:NP_001158295.1Re-query CCDS DB by Nucleotide ID:NM_001164823Re-query CCDS DB by Protein ID:NP_001158295Link to BLAST:NP_001158295.1

Chromosomal Locations for CCDS 90690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123021379 123021570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123022166 123022312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123023418 123023468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGCGGCCGGTCCGCAGTCCTCGGGTGCCGCCGTGTCTGCGGCCGCTTACCCTGACTCACCCGTGGAGT
TACCCGCTCGCCTACAGAAAGGCGCGATGCGGCGCCGCTTCTGGGGCGTGTTCAACTGTCTGTGCGCCGG
GGCGTTCGGGGCTCTGGCCGCCGCCGCCGCCAAGCTGGCCTTCGGGAGCCAGGTCAATATTGGCTTATGT
GTCTTAGGCATCGTTGCCATGGCAAGCGCCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTT
TCTCTATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTCTCGAACATACTTTGCTCGGTGGTCCGTGA
TGCCTATGAATCCACAGCAAAAGAAGGGAACGTGGGCTAA

Translation (129 aa):
MAAGPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCLCAGAFGALAAAAAKLAFGSQVNIGLC
VLGIVAMASANSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSVVRDAYESTAKEGNVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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