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Report for CCDS90686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90686.1 Public Mus musculus 9 Cck 23 108 98 CCDS HistoryNCBI Gene:12424Re-query CCDS DB by CCDS ID:90686.1Re-query CCDS DB by GeneID:12424See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90686.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216138.1 ENSMUSP00000150080.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216138.1Link to Ensembl Protein Viewer:ENSMUSP00000150080.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216138Re-query CCDS DB by Protein ID:ENSMUSP00000150080
Original member NCBI NM_001284508.2 NP_001271437.1 Updated not alive Link to Nucleotide Sequence:NM_001284508.2Link to Protein Sequence:NP_001271437.1Re-query CCDS DB by Nucleotide ID:NM_001284508Re-query CCDS DB by Protein ID:NP_001271437
Current member NCBI NM_001284508.3 NP_001271437.1 Accepted alive Link to Nucleotide Sequence:NM_001284508.3Link to Protein Sequence:NP_001271437.1Re-query CCDS DB by Nucleotide ID:NM_001284508Re-query CCDS DB by Protein ID:NP_001271437Link to BLAST:NP_001271437.1

Chromosomal Locations for CCDS 90686.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121490174 121490201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121493369 121493531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121494317 121494530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGAAGAGCGGCGTATGTCTGTGCGTGGTGATGGCAGTCCTAGCTGCTGGCGCCCTGGCGCAGCCGGTAG
TCCCTGCAGAAGCTACGGACCCCGTGGAGCAGCGGGCGCAAGAGGCGCCCCGAAGGCAGCTGCGGGCTGT
GCTCCGGACGGACGGCGAGCCCCGAGCGCGCCTGGGCGCACTGCTAGCGCGATACATCCAGCAGGTCCGC
AAAGTGGCATGGATGGTGACCTCTGGTTGGGTGTTAACCTGGACCAGTAGAGCTGGATTAAAACACAGGA
GGTGGGCATCCTTTCTGTGGAGCTCACGAACCCAATTTTTCCTGCCCGCATTTGAACAGCCCATGGCTTG
TCGACCTGTCTGCATTTGGCTTGACTGCTCCTTCTGGCCGCATGTCCGTTCTTAA

Translation (134 aa):
MKSGVCLCVVMAVLAAGALAQPVVPAEATDPVEQRAQEAPRRQLRAVLRTDGEPRARLGALLARYIQQVR
KVAWMVTSGWVLTWTSRAGLKHRRWASFLWSSRTQFFLPAFEQPMACRPVCIWLDCSFWPHVRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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