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Report for CCDS90557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90557.1 Public Mus musculus 9 Rexo2 23 108 98 CCDS HistoryNCBI Gene:104444Re-query CCDS DB by CCDS ID:90557.1Re-query CCDS DB by GeneID:104444See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216470.1 ENSMUSP00000149074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216470.1Link to Ensembl Protein Viewer:ENSMUSP00000149074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216470Re-query CCDS DB by Protein ID:ENSMUSP00000149074
Original member Current member NCBI NM_001357505.1 NP_001344434.1 Accepted alive Link to Nucleotide Sequence:NM_001357505.1Link to Protein Sequence:NP_001344434.1Re-query CCDS DB by Nucleotide ID:NM_001357505Re-query CCDS DB by Protein ID:NP_001344434Link to BLAST:NP_001344434.1

Chromosomal Locations for CCDS 90557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 48474338 48474370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48475120 48475197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48479310 48479393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48480407 48480553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGCTAGGCGTATCCCTGGGCGCCAGGCTGTTGCGGGGCGTGGGTGGCAGGCGCGGGCAGTTCGGGGCGC
GAGGTGTCAGCGAAGGTAGCGCAGCCATGGCGGCAGGGGAGAGCATGGCTCAGCGAATGGTCTGGGTGGA
CCTGGAGATGACAGGATTGGATATTGAGAAGGATCAGATTATTGAGATGGCCTGCCTGATAACTGACTCT
GATCTTAACATTTTGGCTGAAGGTCCCAACCTGATTATCAAACAGCCGGACGAGTTGCTGGACAGCATGT
CAGACTGGTGCAAGGAGCATCACGGGAAGATAGTCTTCTATAGTAGTGGTTCGAGTAACTGA

Translation (113 aa):
MLGVSLGARLLRGVGGRRGQFGARGVSEGSAAMAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDS
DLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKIVFYSSGSSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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