NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90487.1 Public Mus musculus 8 Rbm34 23 108 98 CCDS HistoryNCBI Gene:52202Re-query CCDS DB by CCDS ID:90487.1Re-query CCDS DB by GeneID:52202See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212618.1 ENSMUSP00000148473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212618.1Link to Ensembl Protein Viewer:ENSMUSP00000148473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212618Re-query CCDS DB by Protein ID:ENSMUSP00000148473
Current member NCBI NM_001374800.1 NP_001361729.1 Accepted alive Link to Nucleotide Sequence:NM_001374800.1Link to Protein Sequence:NP_001361729.1Re-query CCDS DB by Nucleotide ID:NM_001374800Re-query CCDS DB by Protein ID:NP_001361729Link to BLAST:NP_001361729.1

Chromosomal Locations for CCDS 90487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 126949235 126949543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126950700 126950818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126951302 126951341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126953164 126953227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126953366 126953449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126959542 126959585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126965382 126965622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126969983 126970128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126970738 126970909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126970990 126971039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGCTCTGGGAGGGGAGGAACGCAAGAGAAGGAAGGGCTCGGAGCGGAGACAGAGCTCTGGAGACGGCG
TGAGCTGTGCGGCCAGCGACTACCTGGTGGGACAGGTCGCCGACAGCTTGCGGGGCGGCCCGCGGCCTCC
TGGAGGCGGGACGGGGCGGCTGGCCGCTCTCTTCAGCACCGCGGAGCCATCGGCTCCTCCTGTATTTGTG
CCTGTGCCCCAGGAAACATCTAAAAAAAGAAAACTTGATGATGATGATGATGATGAAGAAGAGAGTGTGT
CCCAAACTAAAAAGCCAGTTTTGCAAGAGCCTTCGAGAAAAGTGAAAGTGAAGAAACTCTCTGATGCAGA
CAAAAGACTGGCAAACAGGGAAAGTGCTCTAGCAAGTGCTGATCTAGAAGAAGAGCTTCATCAGGACCAA
GGGCAGGGAAGAAGGAGAAGGTCTCAGTCTCGGGGTAAAGTGGCAGATGGAGAAGCACTGGACGTTGCCC
TCAGCCTTGCTAAGGATGGGGGCCAAAGAACAAAAATCCCAGTCAACCCCGAAGAGGAGCGGTTAAAAAA
CGAGAGGACTGTGTTTGTTGGCAATTTGCCTGTCACATGTAATAAAAAGATGCCAGCAGAGGGGACACTA
ACCAAGAAGTTGGCTGCAATAAAACGTAAATTTCATCCTGACCAGAAAAGCATCAATGCATATGTAGTGT
TCAAGGATGAGAGCGCCGCTGCAAAAGCTCTGCAAAGAAATGGGGCCCAGATTGCAGAAGGATTTCGTAT
TCGAGTTGATCTGGCATCTGAAACGGCCTCTAGGGACAAGAGATCAGTATTTGTGGGGAATCTTCCTTAC
AAAATTGAAGACTCTGCTTTGGAGGAACACTTTCTGGACTGTGGAAGCATCGTGGCAGTGAGGATCGTGA
GAAACCCACTTACAGGAGTCGGCAGAGGATTTGGCTATGTGCTCTTTGAGAACACAGATGCTGTTCATCT
TGCTTTGAAGTTAAATAATTCTGAGCTAATGGGAAGAAAACTGAGAGTCATGCGTTCTGTTAATAAAGAA
AAACTAAAACAACAGAATTCAAATCCAAGCTTGAAGAAGGATGTCATTAAACCTAAGCAAAGACTTAATT
TTACTTCCAAAGAAGGAAAATTCCATTCCAAAGAAGGAAAATTCCATTCCAAGAATGCATTTATTGGAGA
AAAGGCAGTTCTCATGAAAAAGAAAAAGAAAGGACAAAAGAAAAAAGTACAAATGAAGAAACCAAGAAAA
CAGCAGTAA

Translation (422 aa):
MALGGEERKRRKGSERRQSSGDGVSCAASDYLVGQVADSLRGGPRPPGGGTGRLAALFSTAEPSAPPVFV
PVPQETSKKRKLDDDDDDEEESVSQTKKPVLQEPSRKVKVKKLSDADKRLANRESALASADLEEELHQDQ
GQGRRRRSQSRGKVADGEALDVALSLAKDGGQRTKIPVNPEEERLKNERTVFVGNLPVTCNKKMPAEGTL
TKKLAAIKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPY
KIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSVNKE
KLKQQNSNPSLKKDVIKPKQRLNFTSKEGKFHSKEGKFHSKNAFIGEKAVLMKKKKKGQKKKVQMKKPRK
QQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH