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Report for CCDS90457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90457.1 Public Mus musculus 8 Terf2 23 108 98 CCDS HistoryNCBI Gene:21750Re-query CCDS DB by CCDS ID:90457.1Re-query CCDS DB by GeneID:21750See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 90457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068421.12 ENSMUSP00000068948.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068421.12Link to Ensembl Protein Viewer:ENSMUSP00000068948.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068421Re-query CCDS DB by Protein ID:ENSMUSP00000068948
Original member Current member NCBI NM_001371065.1 NP_001357994.1 Accepted alive Link to Nucleotide Sequence:NM_001371065.1Link to Protein Sequence:NP_001357994.1Re-query CCDS DB by Nucleotide ID:NM_001371065Re-query CCDS DB by Protein ID:NP_001357994Link to BLAST:NP_001357994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357994.1 541 O35144-1 541 100% 0 0

Chromosomal Locations for CCDS 90457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 107070407 107070565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107071875 107071915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107072560 107072645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107076610 107076999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107079369 107079469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107081093 107081239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107082983 107083069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107094822 107094952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107095929 107096024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107096122 107096509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCTGCGGGAGCCGGGACAGCGGGCCCTGCTTCCGGCCCGGGCGTTGTGCGTGACCCGATGGCGTCAC
AGCCAAGGAAACGGCCCAGTCGGGAGGGCGGGGAGGGCGGGGAGGGCGAGCGGCGGTCGAACACGATGGC
GGGAGGAGGCGGGAGCAGCGATAGCAGCGGGCGGGCGGCGAGCCGACGGGCATCGCGCAGCGGCGGGCGG
GCTCGACGGGGGCGACACGAGCCAGGGTTGGGAGGCGCGGCCGAGCGGGGCGCGGGGGAAGCTCGCCTGG
AGGAGGCGGTCAACCGCTGGGTGCTCAAGTTCTATTTCCACGAGGCGCTGCGGGCCTTTCGGAGTAGCCG
GTACCGGGACTTCAGGCAGATCCGGGACATCATGCAGGCGTTGCTTGTCAGGCCCTTGGGGAAGGAGCAT
ACGGTGTCCCGGTTGCTGCGGGTTATGCAGTGTCTGTCGCGCATTGAAGAAGGAGAAAATTTAGACTGTT
CCTTTGATATGGAGGCTGAGCTCACACCCTTGGAATCAGCTATCAATGTGCTGGAGATGATTAAAACAGA
GTTCACACTGACAGACTCTATGGTTGAATCCAGCAGAAAACTGGTCAAGGAGGCTGCTGTCATTATTTGT
ATCAAAAACAAAGAATTTGAAAAGGCTTCAAAGATTTTGAAAAAATACATGTCTAAGGACCCCACAACTC
AGAAGCTGAGAACTGATCTCCTGAACATTATCCGGGAAAAGAACTTGGCCCACCCTGTTATCCAGAACTT
TTCCTATGAGGTCTTCCAGCAGAAGATGCTGCGTTTCCTAGAGAGCCACCTGGATGACACGGAGCCCTAC
CTCCTCACGATGGCTAAAAAAGCTTTGAAATCTGAATCAGCTGCTTCAAGTACAATGAGGGAAGAAAAGC
ACCCAGAGCCAGTGGAAAAACCACTTAGAGAGCCTCCAAGCAGACAGCCTCAGAACCCTCCAGCCACCAT
CGGGATCAGGACTCTGAAGGCAGCTTTCAAAGCTCTGTCTACTGCACAAGACTCAGAGGCCGCTTTTGCA
AAACTGGACCAGAAAGATCTGGTACTTGCTAATCTGGCATCCCCATCATCACCAGCCCACAAACACAAGA
GACCCAGGAAAGATGAACATGAAAGCGCAGCTCCTGCTGAGGGTGAGGGAGGCTCAGACCGGCAGCCCAG
GAACAGTCCCATGACAATAAGCAGATTGCTGTTGGAGGAGGACAGCCAGAGTACTGAGCCCAGCCCAGGC
CTCAACTCCTCCCACAAGGCCATGTCAGCATCCAAGCCCAGAGCTCTCAACCAACCCCACCCGGGGGAGA
AGAAGCCCAAAGCATCCAAAGACAAGTGGAACAGCCCTAACGGGCTTGAAGAAAAGGAAGTTTGGTTGGA
AGAGGACCAGCTGTTTGAAGTTCAGGCACCAGGTGAAGACAGGTCATCCAGTTTAACAAGAAAGCAGAAG
TGGACCATAGAAGAAAGCGAGTGGGTGAAGGATGGAGTGCGCAAATACGGGGAAGGAAACTGGGCTGCCA
TTTCTAAAAGTTACCCCTTTGTCAACCGAACAGCTGTGATGATTAAAGACCGCTGGCGGACCATGAAAAA
ACTTGGCATGAACTGA

Translation (541 aa):
MAAGAGTAGPASGPGVVRDPMASQPRKRPSREGGEGGEGERRSNTMAGGGGSSDSSGRAASRRASRSGGR
ARRGRHEPGLGGAAERGAGEARLEEAVNRWVLKFYFHEALRAFRSSRYRDFRQIRDIMQALLVRPLGKEH
TVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTDSMVESSRKLVKEAAVIIC
IKNKEFEKASKILKKYMSKDPTTQKLRTDLLNIIREKNLAHPVIQNFSYEVFQQKMLRFLESHLDDTEPY
LLTMAKKALKSESAASSTMREEKHPEPVEKPLREPPSRQPQNPPATIGIRTLKAAFKALSTAQDSEAAFA
KLDQKDLVLANLASPSSPAHKHKRPRKDEHESAAPAEGEGGSDRQPRNSPMTISRLLLEEDSQSTEPSPG
LNSSHKAMSASKPRALNQPHPGEKKPKASKDKWNSPNGLEEKEVWLEEDQLFEVQAPGEDRSSSLTRKQK
WTIEESEWVKDGVRKYGEGNWAAISKSYPFVNRTAVMIKDRWRTMKKLGMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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