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Report for CCDS90329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90329.1 Public Mus musculus 7 Cln3 23 108 98 CCDS HistoryNCBI Gene:12752Re-query CCDS DB by CCDS ID:90329.1Re-query CCDS DB by GeneID:12752See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098036.8 ENSMUSP00000095644.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098036.8Link to Ensembl Protein Viewer:ENSMUSP00000095644.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098036Re-query CCDS DB by Protein ID:ENSMUSP00000095644
Original member NCBI NM_001329789.1 NP_001316718.1 Updated not alive Link to Nucleotide Sequence:NM_001329789.1Link to Protein Sequence:NP_001316718.1Re-query CCDS DB by Nucleotide ID:NM_001329789Re-query CCDS DB by Protein ID:NP_001316718
Current member NCBI NM_001329789.2 NP_001316718.1 Accepted alive Link to Nucleotide Sequence:NM_001329789.2Link to Protein Sequence:NP_001316718.1Re-query CCDS DB by Nucleotide ID:NM_001329789Re-query CCDS DB by Protein ID:NP_001316718Link to BLAST:NP_001316718.1

Chromosomal Locations for CCDS 90329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126572267 126572386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126572471 126572611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126574994 126575087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126575203 126575258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126575344 126575412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126575490 126575536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126577809 126577921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126579173 126579316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126579401 126579473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126580144 126580229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126580333 126580412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126581646 126581742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126582764 126582842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126583000 126583045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGGAAGTTCTGCGGGCTCGTGGAGGCGCCTTGAGGATTCTGAGAGGGAGGAGACCGACTCAGAGCCCC
AGGCCCCTCGGTTGGATAGTCGGAGTGTCCTTTGGAAGAATGCAGTGGGTTTCTGGATCTTGGGTCTTTG
CAACAATTTCTCATATGTGGTGATGCTGAGCGCTGCCCATGACATCCTCAAGCAGGAGCAGGCGTCTGGA
AACCAGAGCCATGCGGTGCTCCTAGCAGACATCCTTCCCACCCTTGTCATCAAACTCCTGGCGCCTCTTG
GCCTTCACTTGCTGCCTTACAGCCCCCGGGTGCTCGTCAGTGGAGTTTGTTCTGCTGGGAGCTTTGTTCT
GGTTGCCTTCTCTCAGTCAGTGGGGTTAAGCCTGTGTGGAGTGGTTTTGGCCAGCATCTCCTCAGGGCTA
GGGGAGGTCACCTTCCTCTCACTGACTGCCTTCTACCCCAGTGCTGTGATCTCATGGTGGTCTTCGGGTA
CCGGGGGTGCAGGGCTTCTTGGATCGCTGTCTTACCTGGGACTCACCCAGGCTGGCCTCTCCCCGCAGCA
CACCCTACTTTCTATGTTGGGGATCCCTGTTCTGCTGCTAGCCAGCTATTTCTTGTTGCTCACGTCTCCT
GAACCCCTGGACCCTGGAGGGGAAAACGAGGCAGAGACTGCTGCCCGGCAGCCTCTCATAGGCACCGAGA
CCCCAGAGTCAAAGCCAGGTGCCAGCTGGGACCTCTCCCTCCAGGAAAGGTGGACAGTGTTCAAGGGTCT
CTTGTGGTACATCATCCCTCTGGTGCTGGTCTACTTTGCAGAATACTTTATCAACCAGGGACTTTTCGAG
CTCCTGTTTTTCCGGAACACTTCCCTAAGCCATGCTCAGCAGTACCGATGGTACCAGATGCTATACCAGG
CTGGTGTGTTCGCCTCCCGCTCTTCTCTCCAATGTTGCCGAATACGGTTCACCTGGGTCCTAGCCCTGCT
CCAGTGCCTCAACCTGGCCCTCCTGCTGGCAGATGTCTGCTTGAACTTCTTGCCCAGCATCTACCTCATC
TTCATCATCATTCTGTACGAAGGGCTCCTGGGTGGGGCCGCTTACGTGAATACCTTCCACAACATTGCTC
TGGAGACCAGTGACAAGCACCGAGAGTTTGCCATGGAAGCTGCCTGTATCTCTGACACCTTGGGAATCTC
CCTGTCGGGGGTCCTGGCCCTGCCTCTGCATGACTTCCTCTGTCACCTCCCTTGA

Translation (414 aa):
MGSSAGSWRRLEDSEREETDSEPQAPRLDSRSVLWKNAVGFWILGLCNNFSYVVMLSAAHDILKQEQASG
NQSHAVLLADILPTLVIKLLAPLGLHLLPYSPRVLVSGVCSAGSFVLVAFSQSVGLSLCGVVLASISSGL
GEVTFLSLTAFYPSAVISWWSSGTGGAGLLGSLSYLGLTQAGLSPQHTLLSMLGIPVLLLASYFLLLTSP
EPLDPGGENEAETAARQPLIGTETPESKPGASWDLSLQERWTVFKGLLWYIIPLVLVYFAEYFINQGLFE
LLFFRNTSLSHAQQYRWYQMLYQAGVFASRSSLQCCRIRFTWVLALLQCLNLALLLADVCLNFLPSIYLI
FIIILYEGLLGGAAYVNTFHNIALETSDKHREFAMEAACISDTLGISLSGVLALPLHDFLCHLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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