NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90207.1 Public Mus musculus 7 Mag 23 108 98 CCDS HistoryNCBI Gene:17136Re-query CCDS DB by CCDS ID:90207.1Re-query CCDS DB by GeneID:17136See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191081.6 ENSMUSP00000139881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191081.6Link to Ensembl Protein Viewer:ENSMUSP00000139881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191081Re-query CCDS DB by Protein ID:ENSMUSP00000139881
Original member NCBI NM_001346084.1 NP_001333013.1 Updated not alive Link to Nucleotide Sequence:NM_001346084.1Link to Protein Sequence:NP_001333013.1Re-query CCDS DB by Nucleotide ID:NM_001346084Re-query CCDS DB by Protein ID:NP_001333013
Current member NCBI NM_001346084.2 NP_001333013.1 Accepted alive Link to Nucleotide Sequence:NM_001346084.2Link to Protein Sequence:NP_001333013.1Re-query CCDS DB by Nucleotide ID:NM_001346084Re-query CCDS DB by Protein ID:NP_001333013Link to BLAST:NP_001333013.1
Original member NCBI NM_001346085.1 NP_001333014.1 Updated not alive Link to Nucleotide Sequence:NM_001346085.1Link to Protein Sequence:NP_001333014.1Re-query CCDS DB by Nucleotide ID:NM_001346085Re-query CCDS DB by Protein ID:NP_001333014
Current member NCBI NM_001346085.2 NP_001333014.1 Accepted alive Link to Nucleotide Sequence:NM_001346085.2Link to Protein Sequence:NP_001333014.1Re-query CCDS DB by Nucleotide ID:NM_001346085Re-query CCDS DB by Protein ID:NP_001333014Link to BLAST:NP_001333014.1
Original member Current member NCBI NM_001369262.1 NP_001356191.1 Accepted alive Link to Nucleotide Sequence:NM_001369262.1Link to Protein Sequence:NP_001356191.1Re-query CCDS DB by Nucleotide ID:NM_001369262Re-query CCDS DB by Protein ID:NP_001356191Link to BLAST:NP_001356191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333013.1 627 P20917-1 627 100% 0 0
NP_001333014.1 627 P20917-1 627 100% 0 0
NP_001356191.1 627 P20917-1 627 100% 0 0

Chromosomal Locations for CCDS 90207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30899531 30899698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30900638 30900737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30901063 30901159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30901649 30901936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30906906 30907166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30908365 30908622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30908976 30909272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30911401 30911769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30911891 30911936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGATATTCCTCGCCACCCTGCCGCTGTTTTGGATAATGATTTCAGCTTCTCGAGGGGGCCACTGGGGTG
CCTGGATGCCCTCGACCATCTCAGCCTTCGAGGGCACGTGTGTCTCCATTCCCTGCCGTTTCGACTTCCC
CGATGAGCTCAGACCGGCTGTGGTACATGGCGTCTGGTATTTCAATAGTCCCTACCCCAAGAACTACCCA
CCGGTGGTCTTCAAGTCCCGCACACAAGTGGTCCATGAGAGTTTCCAGGGCCGCAGCCGCCTATTGGGAG
ACCTGGGCCTACGAAACTGTACCCTGCTTCTCAGCACACTGAGCCCCGAGCTGGGAGGCAAATACTATTT
CCGAGGCGACCTGGGTGGCTACAACCAGTACACCTTCTCGGAGCACAGCGTCCTGGACATCGTCAACACC
CCCAACATTGTGGTTCCCCCGGAAGTGGTGGCAGGAACGGAAGTGGAGGTCAGTTGTATGGTGCCGGACA
ACTGCCCAGAGCTGCGGCCAGAGCTGAGCTGGCTGGGCCACGAGGGGCTGGGAGAGCCCACTGTGCTGGG
TCGGCTGCGTGAGGATGAAGGCACCTGGGTGCAGGTGTCGCTGCTACACTTCGTGCCTACTAGAGAGGCC
AACGGCCACCGTCTGGGCTGTCAGGCTGCCTTCCCCAACACCACCTTGCAGTTCGAGGGTTACGCCAGTT
TGGACGTCAAGTACCCCCCAGTGATTGTGGAGATGAATTCCTCTGTGGAGGCCATTGAGGGCTCCCATGT
CAGCCTGCTCTGTGGGGCTGACAGCAACCCGCCGCCGCTGCTGACTTGGATGCGGGATGGGATGGTGTTG
AGGGAGGCAGTTGCCAAGAGCCTGTACCTGGATCTGGAGGAGGTGACCCCAGGAGAGGACGGCGTCTATG
CTTGCCTAGCAGAGAACGCCTATGGCCAGGACAACCGCACGGTGGAGCTGAGTGTCATGTATGCACCTTG
GAAGCCCACAGTGAATGGGACGGTGGTGGCCGTAGAGGGGGAGACTGTCTCTATCCTGTGTTCCACACAG
AGCAACCCGGACCCCATCCTTACCATCTTCAAGGAGAAGCAGATCCTAGCCACGGTCATCTATGAGAGTC
AGCTGCAGCTGGAACTCCCTGCAGTGACCCCCGAGGATGATGGGGAATACTGGTGTGTGGCTGAGAACCA
GTATGGCCAGAGAGCCACTGCCTTCAACCTGTCTGTGGAGTTTGCCCCCATAATCCTTCTGGAGTCACAC
TGTGCAGCGGCCAGAGACACCGTGCAGTGTCTATGTGTGGTAAAATCCAACCCGGAACCCTCTGTGGCCT
TTGAGCTGCCTTCCCGCAACGTGACTGTGAATGAGACGGAGAGGGAGTTTGTGTACTCCGAGCGCAGTGG
CCTCCTGCTCACCAGCATCCTCACGATCCGGGGTCAGGCCCAAGCCCCACCCCGCGTCATTTGTACCTCC
AGGAACCTCTATGGCACCCAGAGCCTCGAGCTGCCTTTCCAGGGAGCACACCGACTGATGTGGGCCAAAA
TCGGTCCTGTGGGTGCTGTGGTCGCCTTTGCCATCCTGATTGCCATTGTGTGCTACATCACCCAGACGAG
AAGAAAAAAGAATGTCACGGAGAGCTCCAGCTTCTCAGGGGGAGACAACCCTCATGTCCTGTACAGCCCC
GAATTCAGAATCTCTGGGGCACCTGATAAGTATGAGAGTGAGAAGCAGCGCCTGGGATCTGAGAGGAGGC
TGCTGGGCCTTCGGGGGGAATCCCCAGAACTGGACCTCAGTTATTCCCACTCAGACCTGGGAAAACGACC
CACCAAGGACAGCTACACCCTGACAGAGGAGCTGGCTGAGTATGCAGAAATCCGAGTCAAGTGA

Translation (627 aa):
MIFLATLPLFWIMISASRGGHWGAWMPSTISAFEGTCVSIPCRFDFPDELRPAVVHGVWYFNSPYPKNYP
PVVFKSRTQVVHESFQGRSRLLGDLGLRNCTLLLSTLSPELGGKYYFRGDLGGYNQYTFSEHSVLDIVNT
PNIVVPPEVVAGTEVEVSCMVPDNCPELRPELSWLGHEGLGEPTVLGRLREDEGTWVQVSLLHFVPTREA
NGHRLGCQAAFPNTTLQFEGYASLDVKYPPVIVEMNSSVEAIEGSHVSLLCGADSNPPPLLTWMRDGMVL
REAVAKSLYLDLEEVTPGEDGVYACLAENAYGQDNRTVELSVMYAPWKPTVNGTVVAVEGETVSILCSTQ
SNPDPILTIFKEKQILATVIYESQLQLELPAVTPEDDGEYWCVAENQYGQRATAFNLSVEFAPIILLESH
CAAARDTVQCLCVVKSNPEPSVAFELPSRNVTVNETEREFVYSERSGLLLTSILTIRGQAQAPPRVICTS
RNLYGTQSLELPFQGAHRLMWAKIGPVGAVVAFAILIAIVCYITQTRRKKNVTESSSFSGGDNPHVLYSP
EFRISGAPDKYESEKQRLGSERRLLGLRGESPELDLSYSHSDLGKRPTKDSYTLTEELAEYAEIRVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH