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Report for CCDS90101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90101.1 Public Mus musculus 6 Il17re 23 108 98 CCDS HistoryNCBI Gene:57890Re-query CCDS DB by CCDS ID:90101.1Re-query CCDS DB by GeneID:57890See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204774.2 ENSMUSP00000145384.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204774.2Link to Ensembl Protein Viewer:ENSMUSP00000145384.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204774Re-query CCDS DB by Protein ID:ENSMUSP00000145384
Original member Current member NCBI NM_001362205.1 NP_001349134.1 Accepted alive Link to Nucleotide Sequence:NM_001362205.1Link to Protein Sequence:NP_001349134.1Re-query CCDS DB by Nucleotide ID:NM_001362205Re-query CCDS DB by Protein ID:NP_001349134Link to BLAST:NP_001349134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349134.1 617 Q8BH06-2 617 100% 0 0

Chromosomal Locations for CCDS 90101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113458895 113459026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113459360 113459375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113462279 113462376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113462594 113462753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113462828 113462967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113463953 113464021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113464761 113464827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113465715 113465890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113465980 113466027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113466109 113466154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113466253 113466407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113468437 113468505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113468906 113468957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113469518 113470143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGGGAGCCCCAGACTGGCAGCCTTGCTCCTGTCTCTCCCGCTACTGCTCATCGGCCTCGCTGTGTCTG
CTCGGGTTGCCTGCCCCTGCCTGCGGAGTTGGACCAGCCACTGTCTCCTGGCCTACCGTGTGGATAAACG
TTTTGCTGGCCTTCAGTGGGGCTGGTTCCCTCTCTTGGTGAGGAAATCTAAAAGTCCTCCTAAATTTGAA
GACTATTGGAGGCACAGGACACCAGCATCCTTCCAGAGGAAGCTGCTAGGCAGCCCTTCCCTGTCTGAGG
AAAGCCATCGAATTTCCATCCCCTCCTCAGCCATCTCCCACAGAGGCCAACGCACCAAAAGGGCCCAGCC
TTCAGCTGCAGAAGGAAGAGAACATCTCCCTGAAGCAGGGTCACAAAAGTGTGGAGGACCTGAATTCTCC
TTTGATTTGCTGCCCGAGGTGCAGGCTGTTCGGGTGACTATTCCTGCAGGCCCCAAGGCCAGTGTGCGCC
TTTGTTATCAGTGGGCACTGGAATGTGAAGACTTGAGTAGCCCTTTTGATACCCAGAAAATTGTGTCTGG
AGGCCACACTGTAGACCTGCCTTATGAATTCCTTCTGCCCTGCATGTGCATAGAGGCCTCCTACCTGCAA
GAGGACACTGTGAGGCGCAAAAAGTGTCCCTTCCAGAGCTGGCCTGAAGCTTATGGCTCAGACTTCTGGC
AGTCAATACGCTTCACTGACTACAGCCAGCACAATCAGATGGTCATGGCTCTGACACTCCGCTGCCCACT
GAAACTGGAGGCCTCCCTCTGCTGGAGGCAGGACCCACTCACACCCTGCGAAACCCTTCCCAACGCCACA
GCACAGGAGTCAGAAGGATGGTATATCCTGGAGAATGTGGACTTGCACCCCCAGCTCTGCTTTAAGTTCT
CATTTGAAAACAGCAGCCACGTTGAATGTCCCCACCAGAGTGGCTCTCTCCCATCCTGGACTGTGAGCAT
GGATACCCAGGCCCAGCAGCTGACGCTTCACTTTTCTTCGAGGACATATGCCACCTTCAGTGCTGCCTGG
AGTGACCCAGGTTTGGGGCCGGATACCCCCATGCCTCCTGTGTACAGCATCAGCCAGACCCAGGGCTCAG
TCCCAGTGACGCTAGACCTCATCATCCCCTTCCTGAGGCAGGAGAATTGCATCCTGGTGTGGAGGTCAGA
TGTCCATTTTGCCTGGAAGCACGTCTTGTGTCCTGATGACGCCCCTTACCCTACTCAGCTGTTGCTCCGG
TCCCTAGGCTCCGGTCGAACAAGGCCAGTTTTACTCCTACATGCAGCGGACTCAGAGGCACAGCGACGCC
TGGTGGGAGCTTTGGCCGAACTGCTGCGGACGGCGCTGGGAGGTGGACGCGACGTGATCGTGGATCTCTG
GGAAGGGACGCACGTAGCACGCATTGGACCACTGCCGTGGCTTTGGGCAGCGCGGGAGCGCGTGGCGCGG
GAGCAGGGCACAGTGCTGCTCCTGTGGAACTGTGCGGGTCCCAGCACCGCCTGCAGCGGTGACCCGCAGG
CTGCGTCCCTTCGCACCTTGTTGTGCGCTGCTCCACGTCCGCTGCTGCTCGCCTACTTCAGTCGCCTCTG
CGCCAAAGGTGACATCCCCCGGCCGCTGCGCGCTCTGCCACGCTACCGCCTGCTTCGTGACCTGCCGCGC
CTGCTGAGAGCACTGGATGCTCAGCCTGCCACCCTAGCCTCCAGCTGGAGTCACCTTGGGGCTAAGCGGT
GCTTGAAAAACCGTCTGGAGCAGTGTCACCTGCTGGAACTTGAGGCTGCCAAAGATGACTACCAAGGCTC
AACCAATAGTCCCTGTGGTTTCAGCTGTCTGTAG

Translation (617 aa):
MGSPRLAALLLSLPLLLIGLAVSARVACPCLRSWTSHCLLAYRVDKRFAGLQWGWFPLLVRKSKSPPKFE
DYWRHRTPASFQRKLLGSPSLSEESHRISIPSSAISHRGQRTKRAQPSAAEGREHLPEAGSQKCGGPEFS
FDLLPEVQAVRVTIPAGPKASVRLCYQWALECEDLSSPFDTQKIVSGGHTVDLPYEFLLPCMCIEASYLQ
EDTVRRKKCPFQSWPEAYGSDFWQSIRFTDYSQHNQMVMALTLRCPLKLEASLCWRQDPLTPCETLPNAT
AQESEGWYILENVDLHPQLCFKFSFENSSHVECPHQSGSLPSWTVSMDTQAQQLTLHFSSRTYATFSAAW
SDPGLGPDTPMPPVYSISQTQGSVPVTLDLIIPFLRQENCILVWRSDVHFAWKHVLCPDDAPYPTQLLLR
SLGSGRTRPVLLLHAADSEAQRRLVGALAELLRTALGGGRDVIVDLWEGTHVARIGPLPWLWAARERVAR
EQGTVLLLWNCAGPSTACSGDPQAASLRTLLCAAPRPLLLAYFSRLCAKGDIPRPLRALPRYRLLRDLPR
LLRALDAQPATLASSWSHLGAKRCLKNRLEQCHLLELEAAKDDYQGSTNSPCGFSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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