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Report for CCDS90081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90081.1 Public Mus musculus 6 Tprkb 23 108 98 CCDS HistoryNCBI Gene:69786Re-query CCDS DB by CCDS ID:90081.1Re-query CCDS DB by GeneID:69786See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089570.6 ENSMUSP00000086998.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089570.6Link to Ensembl Protein Viewer:ENSMUSP00000086998.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089570Re-query CCDS DB by Protein ID:ENSMUSP00000086998
Original member Current member EBI ENSMUST00000202803.3 ENSMUSP00000144660.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202803.3Link to Ensembl Protein Viewer:ENSMUSP00000144660.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202803Re-query CCDS DB by Protein ID:ENSMUSP00000144660
Original member Current member NCBI NM_001362067.1 NP_001348996.1 Accepted alive Link to Nucleotide Sequence:NM_001362067.1Link to Protein Sequence:NP_001348996.1Re-query CCDS DB by Nucleotide ID:NM_001362067Re-query CCDS DB by Protein ID:NP_001348996Link to BLAST:NP_001348996.1

Chromosomal Locations for CCDS 90081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85924382 85924522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85927241 85927363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85927808 85928020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGCAGCTATCACAGCAGCTGGACTTGTTTCCTGAATGCAGGGTGACCCTTCTGTTATTTAAAGATGTAA
AAAATGCAGGAGACTTGAGAAAAAAGGCCATGGAAGGATCTATTGATGGTTCATTGATAAACCCCAATGT
GATTGTCGATCCATTTCAGATACTTGTGGCAGCAAACAAAGCCGTTCATCTCCACAGACTGGGAAAAATG
AAGACAAGAACTCTGTCTACTGAAATTATCTTCAACCTCTCCCCAAATAATAATATTTCAGAGGCCTTGA
AGAAATTTGGCATTTCAGAAACTAACACTTCAGTTCTGATTGTTTACATTGAAGATGGAAGCAAACAAGT
ACCACAGGAACACCTAGTATCTCAAGTGGAAGGCCAGCAGGTGCCTTTGGAAAGTCTTCCAGAAATAACA
AGGCTCTCGGAAGTCAAGAAGGTTTGTCCTGCACATTTTGAAGAGTTCAGTAGATGA

Translation (158 aa):
MQLSQQLDLFPECRVTLLLFKDVKNAGDLRKKAMEGSIDGSLINPNVIVDPFQILVAANKAVHLHRLGKM
KTRTLSTEIIFNLSPNNNISEALKKFGISETNTSVLIVYIEDGSKQVPQEHLVSQVEGQQVPLESLPEIT
RLSEVKKVCPAHFEEFSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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