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Report for CCDS89876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89876.1 Public Mus musculus 4 Samd11 23 108 98 CCDS HistoryNCBI Gene:231004Re-query CCDS DB by CCDS ID:89876.1Re-query CCDS DB by GeneID:231004See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218788.1 ENSMUSP00000151442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218788.1Link to Ensembl Protein Viewer:ENSMUSP00000151442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218788Re-query CCDS DB by Protein ID:ENSMUSP00000151442
Original member Current member EBI ENSMUST00000217934.1 ENSMUSP00000151756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217934.1Link to Ensembl Protein Viewer:ENSMUSP00000151756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217934Re-query CCDS DB by Protein ID:ENSMUSP00000151756
Original member Current member NCBI NM_001355709.1 NP_001342638.1 Accepted alive Link to Nucleotide Sequence:NM_001355709.1Link to Protein Sequence:NP_001342638.1Re-query CCDS DB by Nucleotide ID:NM_001355709Re-query CCDS DB by Protein ID:NP_001342638Link to BLAST:NP_001342638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342638.1 542 Q1RNF8 542 100% 0 0

Chromosomal Locations for CCDS 89876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156247724 156247969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156248088 156248198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156248337 156248458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156248620 156249122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156249195 156249273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156249385 156249500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156250338 156250500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156251946 156252080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156252227 156252313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156254456 156254522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGCCTGAGCATCCAAGACACTGTGACTTCCAGAGAGGCAACGTGGAGATCGGCCTTGGACCTGGAGGCG
ACCTGTTGGGCAAGAGGCTGAGCTGCCCCTGCATCACCAGTCACTGCTCTTCAGAGAAGAAGGCCAGAAG
CAAGGACCCCCAAGCGACTTCGCTGCTTCCCGAGCTAGAGTCTACAATGGCCCCCGAGGACCACTACCAT
CAGCTTATGTCGGCCCTGAGTGAGGCCAGCTCCTTTGAGGAAACTCAACGTCTCTACCACTTGGGTATCC
CCAGCCACGATCTGCTTAGGGTACGCCAGGAAGTAGCAACTGCAACACTGAGGGGTCCCAGTGGCTTGGA
AGTTCACCTGCCCTCGTCTACAGCAGACCATCGACGGAAGCAAGGCCTAGTTCAGCGCCGGGAAGGGGCG
GTTCCAGCTGCTGCCACATCTTTCTCTGAAAGGGAAATGTCACAGCCACCCCCTTTGCTGTCACCCCAGA
ATGCCGCCCACATCACAATGAGCTCCCATCTCCGGCCTCCTTTTCTGGGGATGCCCACAGCTGTGTGTCA
GACCCCAGGTTTCAGCTTCCTACCCTCCGCCCAGGCTGAGATGTTAGCTCGGCAGCAGGAACTTCTACGG
AAGCAGAGCCTGGCTCGGCTGGAAATGTCAGAGTTGCTTAGGCAGAAAGAACTGGGCAGTGTTCACCGGC
CACTGCTACCGGCACCAGAGGTGGCCTTGCATATCCCCGAGGGTCCCGACGAACTGCAGCGACGTGGCTC
CATGCTGGTTTTGAAACACAGCTCAGCACCACTACTGGCCCTGCCACCCCAGGGACCCCCAGGCCCAGGA
CCCCCTATCCCACCCAAGGAGTCTGCTCGAAGCCGGTCCGAAAAGGGGAGCCTTGGTGTCCAGCCCAGCC
AACCCAAGGAGACGACAGGGGCTGGCCTCTGGGCTCAAGAAGTCTCTGAGGAGCCATCCAAGGACTCAGA
TGGAGAGGACCCCGAGACAGCAGCTGCCAGGGAAGGGACCTCCACTCCCAGCCAAGTCCCAGCAGGAGGG
ACCAGAGCAGAAGGAAGGGGGCTTCTATCAGGGTCCACACTGCCCCCTCCACTGCCCCTGGGATTCCCTT
GCGGGGCAGTGAGCCCCTACTTCCACACAGGTACCATGGGGGGGCTCTTCACTGATGAGGAGACCACAAC
CCTTGAGGATGTCAACAAGTGGACTGTAGATGATGTCTGCAACTTCGTGGGGGGCCTTTCTGGCTGTGGC
GAGTATGCCAGGGTATTCGGAGAACAAGGAATAGACGGAGAGACTTTGCCTCTACTGACAGAAGAGCACC
TTCTGAACACCATGGGACTGAAGCTAGGGCCTGCCCTCAAGATCAGGGCACAAGTGGCCAAGCGCCTGGG
CCGTGTCTTCTACATGGCCAGCTTCCCTGTGGCCCTGCCGCTGCAGCCACCAAGCCTGCAAGCACCTGAG
CTCAGCCCAGGACATCAACCTCTGTCGCCAGCAACCACCACCTCCCCGTATGAAGGGACCCACCTGCCCA
CAGGACAAGCCTCACCCAAGCAGGAGAATGGGTCAGGGACCATAGCTCTGCTTTCAGGTGCCCCAGACCC
TTCCCAGCTTCTCCAATGA

Translation (542 aa):
MPEHPRHCDFQRGNVEIGLGPGGDLLGKRLSCPCITSHCSSEKKARSKDPQATSLLPELESTMAPEDHYH
QLMSALSEASSFEETQRLYHLGIPSHDLLRVRQEVATATLRGPSGLEVHLPSSTADHRRKQGLVQRREGA
VPAAATSFSEREMSQPPPLLSPQNAAHITMSSHLRPPFLGMPTAVCQTPGFSFLPSAQAEMLARQQELLR
KQSLARLEMSELLRQKELGSVHRPLLPAPEVALHIPEGPDELQRRGSMLVLKHSSAPLLALPPQGPPGPG
PPIPPKESARSRSEKGSLGVQPSQPKETTGAGLWAQEVSEEPSKDSDGEDPETAAAREGTSTPSQVPAGG
TRAEGRGLLSGSTLPPPLPLGFPCGAVSPYFHTGTMGGLFTDEETTTLEDVNKWTVDDVCNFVGGLSGCG
EYARVFGEQGIDGETLPLLTEEHLLNTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPLQPPSLQAPE
LSPGHQPLSPATTTSPYEGTHLPTGQASPKQENGSGTIALLSGAPDPSQLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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