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Report for CCDS89847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89847.1 Public Mus musculus 4 Eif4g3 23 108 98 CCDS HistoryNCBI Gene:230861Re-query CCDS DB by CCDS ID:89847.1Re-query CCDS DB by GeneID:230861See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058133.9 ENSMUSP00000059465.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058133.9Link to Ensembl Protein Viewer:ENSMUSP00000059465.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058133Re-query CCDS DB by Protein ID:ENSMUSP00000059465
Original member Current member NCBI NM_001369131.1 NP_001356060.1 Accepted alive Link to Nucleotide Sequence:NM_001369131.1Link to Protein Sequence:NP_001356060.1Re-query CCDS DB by Nucleotide ID:NM_001369131Re-query CCDS DB by Protein ID:NP_001356060Link to BLAST:NP_001356060.1

Chromosomal Locations for CCDS 89847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138082959 138082988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138084257 138084370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138096752 138096931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138097245 138097359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138103315 138103412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138105314 138105436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138115153 138115200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGAACTCACAACCTCAGGCCCGGTCTCCGCCCGGCAGAACAGTGCCAATACATTGCACAGACACCCGGA
AGAGGAGGAAGGTTTTGGAACAGAGCCCCGTTTACAGGTCCTTGGCTGGAAGAGGCTGGATAAAATACTA
CATTTTTTTCCAGAGGCCTCAAATCCAGCCTCCCCGAGCTGCCATCCCAAACAGCAGTCCTTCCATCCGT
CCCGGTGTGCAGACCCCCACCGCCGTGTATCAGGCCAACCAGCACATCATGATGGTTAACCATCTGCCCA
TGCCGTACCCCGTGACCCAGGGGCATCAGTACTGCATACCACAGTACCGCCACAGCGGCCCTCCGTACGT
GGGGCCCCCACAGCAGTATCCAGTTCAGCCGCCTGGGCCGGGGCCTTTTTATCCTGGACCAGGACCTGGG
GACTTCGCTAATGCTTATGGAACGCCTTTTTACCCAAGTCAGCCAGTGTATCAGTCAGCACCTATCATAG
TGCCTACGCAGCAGCAGCCCCCTCCAGCCAAGAGAGAGAAAAAAACTATAAGAATTCGAGATCCAAATCA
GGGAGGTAAAGACATAACAGAGGAGATTATGTCTGGAGGTGGCAGCAGAAATCCCACTCCACCTATAGGA
AGACCCGCATCCACTCCCACTCCTCCTCAGATTTCCCCTACTCCAGCTATTTCAAAATCTTCCAACATCA
TAGACTAG

Translation (235 aa):
MNSQPQARSPPGRTVPIHCTDTRKRRKVLEQSPVYRSLAGRGWIKYYIFFQRPQIQPPRAAIPNSSPSIR
PGVQTPTAVYQANQHIMMVNHLPMPYPVTQGHQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPG
DFANAYGTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIG
RPASTPTPPQISPTPAISKSSNIID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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