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Report for CCDS89779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89779.1 Public Mus musculus 4 Elavl2 23 108 98 CCDS HistoryNCBI Gene:15569Re-query CCDS DB by CCDS ID:89779.1Re-query CCDS DB by GeneID:15569See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107116.8 ENSMUSP00000102733.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107116.8Link to Ensembl Protein Viewer:ENSMUSP00000102733.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107116Re-query CCDS DB by Protein ID:ENSMUSP00000102733
Original member Current member NCBI NM_001357188.1 NP_001344117.1 Accepted alive Link to Nucleotide Sequence:NM_001357188.1Link to Protein Sequence:NP_001344117.1Re-query CCDS DB by Nucleotide ID:NM_001357188Re-query CCDS DB by Protein ID:NP_001344117Link to BLAST:NP_001344117.1
Original member Current member NCBI NM_001357189.1 NP_001344118.1 Accepted alive Link to Nucleotide Sequence:NM_001357189.1Link to Protein Sequence:NP_001344118.1Re-query CCDS DB by Nucleotide ID:NM_001357189Re-query CCDS DB by Protein ID:NP_001344118Link to BLAST:NP_001344118.1

Chromosomal Locations for CCDS 89779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 91253240 91253570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91254141 91254179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91260761 91260986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91263992 91264145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91281214 91281317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91308611 91308854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91311573 91311644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCAGTCAGACTGTGTGATGTGGCTTCTCTGCTTAGAAGCGGTTCGTGGGCAGCAGAGCCTTGGACCG
GGCAGGTAATTGCTGCCATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCC
AACCACTGTAAACAACAACTGCTCCTCACCAGTTGACTCCGGGAACACAGAGGACAGCAAGACCAACCTA
ATAGTCAACTACCTTCCTCAGAACATGACACAGGAAGAACTAAAGAGTCTTTTTGGGAGCATTGGCGAGA
TAGAGTCCTGTAAGCTTGTAAGAGACAAAATAACAGGGCAGAGCTTGGGTTACGGATTTGTGAACTACAT
TGACCCCAAGGATGCAGAGAAAGCTATCAACACTCTGAATGGATTGAGACTTCAAACCAAAACAATAAAA
GTTTCCTATGCTCGCCCAAGCTCAGCCTCAATCAGAGATGCAAACTTATACGTCAGCGGGCTTCCAAAAA
CCATGACCCAGAAGGAGCTGGAACAGCTGTTTTCACAGTATGGGCGCATCATTACTTCTCGGATTCTTGT
CGACCAGGTCACTGGCATATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGGATTGAGGCAGAAGAA
GCTATCAAAGGCCTAAATGGCCAGAAACCTCCTGGTGCCACAGAGCCAATCACTGTAAAGTTTGCTAATA
ATCCAAGCCAAAAAACCAATCAGGCCATCCTTTCCCAGCTGTACCAGTCTCCAAACAGAAGGTACCCAGG
ACCGCTAGCTCAGCAGGCACAGCGTTTTAGGTTGGACAATCTGCTCAATATGGCTTATGGAGTGAAGAGT
AGGTTTTCTCCAATGACGATCGATGGAATGACCAGTCTGGCTGGAATTAATATTCCTGGGCACCCTGGAA
CAGGCTGGTGCATATTTGTGTACAACCTGGCGCCTGATGCAGATGAAAGTATCCTGTGGCAAATGTTTGG
GCCTTTTGGAGCTGTCACCAACGTGAAGGTCATCCGTGACTTTAACACCAATAAGTGCAAAGGTTTTGGA
TTTGTGACTATGACAAACTATGATGAGGCGGCCATGGCGATAGCTAGCCTCAATGGATACCGCCTGGGAG
ACAGAGTCCTGCAGGTCTCCTTTAAGACAAACAAAACGCACAAAGCCTAA

Translation (389 aa):
MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNL
IVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE
AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKS
RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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