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Report for CCDS89687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89687.1 Public Mus musculus 3 Egf 23 108 98 CCDS HistoryNCBI Gene:13645Re-query CCDS DB by CCDS ID:89687.1Re-query CCDS DB by GeneID:13645See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199615.4 ENSMUSP00000142497.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199615.4Link to Ensembl Protein Viewer:ENSMUSP00000142497.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199615Re-query CCDS DB by Protein ID:ENSMUSP00000142497
Original member Current member NCBI NM_001329594.1 NP_001316523.1 Accepted alive Link to Nucleotide Sequence:NM_001329594.1Link to Protein Sequence:NP_001316523.1Re-query CCDS DB by Nucleotide ID:NM_001329594Re-query CCDS DB by Protein ID:NP_001316523Link to BLAST:NP_001316523.1

Chromosomal Locations for CCDS 89687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129678320 129678555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129681099 129681204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129683191 129683311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129686185 129686352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129690771 129690915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129696791 129696916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129697718 129697834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129702456 129702581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129706104 129706250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129707209 129707376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129711253 129711476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129712954 129713058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129716630 129716778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129717924 129718013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGCATTTTGATGGAACAGACTACAAAGTTCTGCTCAGCCGGCAGATGGGAATGGTTTTTGCCTTGGATT
ATGACCCTGTGGAAAGCAAGATATATTTTGCACAGACAGCCCTGAAGTGGATAGAGAGGGCTAATATGGA
TGGGTCCCAGCGAGAAAGACTGATCACAGAAGGAGTAGATACGCTTGAAGGTCTTGCCCTGGACTGGATT
GGCCGGAGAATCTACTGGACAGACAGTGGGAAGTCTGTTGTTGGAGGGAGCGATCTGAGCGGGAAGCATC
ATCGAATAATCATCCAGGAGAGAATCTCGAGGCCGCGAGGAATAGCTGTGCATCCAAGGGCCAGGAGACT
GTTCTGGACGGACGTAGGGATGTCTCCACGGATTGAAAGCGCTTCCCTTCAAGGTTCCGACCGGGTGCTG
ATAGCCAGCTCCAATCTACTGGAACCCAGTGGAATCACGATTGACTACTTAACAGACACTTTGTACTGGT
GTGACACCAAGAGGTCTGTGATTGAAATGGCCAATCTGGATGGCTCCAAACGCCGAAGACTTATCCAGAA
CGACGTAGGTCACCCCTTCTCTCTAGCCGTGTTTGAGGATCACCTGTGGGTCTCGGATTGGGCTATCCCA
TCGGTAATAAGGGTGAACAAGAGGACTGGCCAAAACAGGGTACGTCTTCAAGGCAGCATGCTGAAGCCCT
CGTCACTGGTTGTGGTCCATCCATTGGCAAAACCAGGTGCAGATCCCTGCTTATACAGGAATGGAGGCTG
TGAACACATCTGCCAAGAGAGCCTGGGCACAGCTCGGTGTTTGTGTCGTGAAGGTTTTGTGAAGGCCTGG
GATGGGAAAATGTGTCTCCCTCAGGATTATCCAATCCTGTCAGGTGAAAATGCTGATCTTAGTAAAGAGG
TGACATCACTGAGCAACTCCACTCAGGCTGAAGTACCAGACGATGATGGGACAGAATCTTCCACACTAGT
GGCTGAAATCATGGTGTCAGGCATGAACTATGAAGATGACTGTGGTCCCGGGGGGTGTGGAAGCCATGCT
CGATGCGTTTCAGACGGAGAGACTGCTGAGTGTCAGTGTCTGAAAGGGTTTGCCAGGGATGGAAACCTGT
GTTCTGATATAGATGAGTGTGTGCTGGCTAGATCGGACTGCCCCAGCACCTCGTCCAGGTGCATCAACAC
TGAAGGTGGCTACGTCTGCAGATGCTCAGAAGGCTACGAAGGAGACGGGATCTCCTGTTTCGACTCTACC
GCACCCTCTCTCCTTGGGGAAGATGGCCACCATTTGGACCGAAATAGTTATCCAGGATGCCCATCCTCAT
ATGATGGATACTGCCTCAATGGTGGCGTGTGCATGCATATTGAATCACTGGACAGCTACACATGCAACTG
TGTTATTGGCTATTCTGGGGATCGATGCCAGACTCGAGACCTACGATGGTGGGAACTGCGTCATGCTGGC
TACGGGCAGAAGCATGACATCATGGTGGTGGCTGTCTGCATGGTGGCACTGGTCCTGCTGCTCGTCTTGG
GGATGTGGGGGACTTACTACTACAGGACTCGGAAGCAGCTATCAAACCCCCCAAAGAACCCTTGTGATGA
GCCAAGCGGAAGTGTGAGCAGCAGCGGACCCAACAGCAGCAGCGGGGCAGCTGTGGCTTCTTGTCCCCAA
CCTTGGTTTGTGGTCCTAGAGAAACACCAAGACCCCAAGAATGGGAGTCTGCCTGCGGATGGTACGAATG
GTGCAGTAGTAGATGCTGGCCTGTCTCCCTCCCTGCAGCTCGGGTCAGTGCATCTGACTTCATGGAGACA
GAAGCCCCACATAGATGGAATGGGCACAGGGCAAAGCTGCTGGATTCCACCATCAAGTGACAGAGGACCC
CAGGAAATAGAGGGAAACTCCCACCTACCCTCCTACAGACCTGTGGGGCCGGAGAAGCTGCATTCTCTCC
AGTCAGCTAATGGATCGTGTCACGAAAGGGCTCCAGACCTGCCACGGCAGACAGAGCCAGTTCAGTAG

Translation (675 aa):
MHFDGTDYKVLLSRQMGMVFALDYDPVESKIYFAQTALKWIERANMDGSQRERLITEGVDTLEGLALDWI
GRRIYWTDSGKSVVGGSDLSGKHHRIIIQERISRPRGIAVHPRARRLFWTDVGMSPRIESASLQGSDRVL
IASSNLLEPSGITIDYLTDTLYWCDTKRSVIEMANLDGSKRRRLIQNDVGHPFSLAVFEDHLWVSDWAIP
SVIRVNKRTGQNRVRLQGSMLKPSSLVVVHPLAKPGADPCLYRNGGCEHICQESLGTARCLCREGFVKAW
DGKMCLPQDYPILSGENADLSKEVTSLSNSTQAEVPDDDGTESSTLVAEIMVSGMNYEDDCGPGGCGSHA
RCVSDGETAECQCLKGFARDGNLCSDIDECVLARSDCPSTSSRCINTEGGYVCRCSEGYEGDGISCFDST
APSLLGEDGHHLDRNSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDLRWWELRHAG
YGQKHDIMVVAVCMVALVLLLVLGMWGTYYYRTRKQLSNPPKNPCDEPSGSVSSSGPNSSSGAAVASCPQ
PWFVVLEKHQDPKNGSLPADGTNGAVVDAGLSPSLQLGSVHLTSWRQKPHIDGMGTGQSCWIPPSSDRGP
QEIEGNSHLPSYRPVGPEKLHSLQSANGSCHERAPDLPRQTEPVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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