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Report for CCDS89623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89623.1 Public Mus musculus 3 Larp1b 23 108 98 CCDS HistoryNCBI Gene:214048Re-query CCDS DB by CCDS ID:89623.1Re-query CCDS DB by GeneID:214048See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191872.5 ENSMUSP00000142106.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191872.5Link to Ensembl Protein Viewer:ENSMUSP00000142106.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191872Re-query CCDS DB by Protein ID:ENSMUSP00000142106
Original member Current member NCBI NM_001368222.1 NP_001355151.1 Accepted alive Link to Nucleotide Sequence:NM_001368222.1Link to Protein Sequence:NP_001355151.1Re-query CCDS DB by Nucleotide ID:NM_001368222Re-query CCDS DB by Protein ID:NP_001355151Link to BLAST:NP_001355151.1

Chromosomal Locations for CCDS 89623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40962187 40962228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40963968 40964142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40969891 40970034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40970451 40970616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40972361 40972505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40976501 40976675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40977208 40977227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCAAACTGGCCAACACCAGGTGAATTGGTTAACACGGGGTCTCAGAGTGTTATCAACCAAGGAAATA
AAAAGCCACAAATTAGAAAAGAAAAAGAAGAGAAGATTGAAAAAAGAAGCAACAGTGAGAGCAAAGAGAA
CCGGGAAGCAAAACTAGATGGTCCTACTGAGAACATCAGCGAGGATGAGGCTCAGTCAAGCAGCCAGAGG
AAGAGAGGTTGGAGACGGGAGAGAGAAAAGAGAGATGATCAAGATGAAGTGTCCAGTGTGAGAAGTGAGG
GTGGTACCATCCGAGGTTCCACTAGAGGTCGGGGACGAGGCCGGGGCCGAGGAAGAGGCCGAGGCCGAGG
GAACCCTCGATTGAACTTTGATTATTCATATGGTTATCGAGAGCCTGGGGAAAGGACTGAGCAGCCATTT
TCTACAGAGCTTAATACCAGCATGATGTATTACTATGATGATGGCACAGGTGTGCGTGTGTATCCTGTTG
AAGAAACACTGCTTAAAGAGTACATTAAGCGCCAAATTGAGTATTACTTCAGCACAGAGAACTTGGAACG
GGACTTCTTTCTTCGAAGAAAGATGGACGAGCAGGGGTTCCTGCCCATTTCCCTGATTGCTGGTTTTCAC
CGTGTGCAGGCTCTCACCACAAACCTTAATCTCATCTTGGAGGCACTTAAGGATAGCACAGAAGTAGAAA
TTGTGGATGAGAAAATGAGGAAAAAGATAGAACCAGAAAAATGGCCAATTCCAGGCCCTCCTCCACGAAA
TGTGCCACAAACAGACTTCTCTCAGTTGATTGATTGTCCGGAGTTCATACCTGGCCAGGCCTTTGGCTCC
CATACAGTCAGGGTGATGATCTACTGA

Translation (288 aa):
MANWPTPGELVNTGSQSVINQGNKKPQIRKEKEEKIEKRSNSESKENREAKLDGPTENISEDEAQSSSQR
KRGWRREREKRDDQDEVSSVRSEGGTIRGSTRGRGRGRGRGRGRGRGNPRLNFDYSYGYREPGERTEQPF
STELNTSMMYYYDDGTGVRVYPVEETLLKEYIKRQIEYYFSTENLERDFFLRRKMDEQGFLPISLIAGFH
RVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRNVPQTDFSQLIDCPEFIPGQAFGS
HTVRVMIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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