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Report for CCDS89573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89573.1 Public Mus musculus 2 Epb41l1 23 108 98 CCDS HistoryNCBI Gene:13821Re-query CCDS DB by CCDS ID:89573.1Re-query CCDS DB by GeneID:13821See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000125153.9 ENSMUSP00000121161.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125153.9Link to Ensembl Protein Viewer:ENSMUSP00000121161.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000125153Re-query CCDS DB by Protein ID:ENSMUSP00000121161
Original member Current member NCBI NM_001368800.1 NP_001355729.1 Accepted alive Link to Nucleotide Sequence:NM_001368800.1Link to Protein Sequence:NP_001355729.1Re-query CCDS DB by Nucleotide ID:NM_001368800Re-query CCDS DB by Protein ID:NP_001355729Link to BLAST:NP_001355729.1

Chromosomal Locations for CCDS 89573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156493918 156494094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156494957 156495121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156495860 156495964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156496486 156496528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156499587 156499662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156503645 156503863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156505766 156505853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156506351 156506503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156508813 156508910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156509132 156509307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156510736 156510881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156511785 156511820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156514028 156514210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156521238 156523160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156523661 156523771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156524881 156525288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156526889 156526993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156529390 156529470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156533781 156533867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156534686 156534769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156536980 156537060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156537367 156537483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156539810 156539818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4671 nt):
ATGACAACAGAGACAGGTCCCGATTCTGAGGTGAAGAAGGCTCAGGAGGAGACTCCACAGCAGCCCGAGG
CTGCCGCAGCTGTGACCACCCCGGTGACCCCCGCGGGCCACAGCCACCCAGAGACCAATTCCAATGAGAA
GCATCTGACCCAGCAGGACACGAGGCCTGCTGAACAGAGCCTGGATATGGACGATAAGGATTACAGTGAG
GCCGATGGCCTGTCGGAGAGGACCACGCCCAGTAAGGCCCAGAAGTCACCTCAGAAGATTGCCAAGAAGT
TCAAGAGTGCCATATGCCGCGTCACCCTGCTCGATGCTTCTGAGTATGAGTGTGAAGTGGAGAAGCACGG
CCGGGGCCAGGTGCTGTTTGACCTGGTCTGTGAGCACCTTAACCTCCTGGAGAAGGACTACTTCGGTCTG
ACCTACTGTGATGCTGACAGCCAGAAGAATTGGCTGGACCCCTCCAAGGAAATCAAGAAGCAGATCCGGA
GTAGCCCCTGGAACTTTGCCTTCACAGTCAAGTTCTACCCTCCTGACCCAGCTCAGCTGACAGAAGACAT
CACAAGGTACTACCTGTGCCTGCAGCTGAGGGCAGACATTATCACAGGCCGCCTGCCTTGCTCCTTTGTC
ACGCATGCCCTTCTGGGCTCCTACGCTGTGCAGGCTGAACTGGGTGACTATGATGCCGAGGAACACGTGG
GCAACTATGTCAGTGAGCTCCGCTTCGCCCCAAACCAGACCCGGGAGCTGGAGGAGAGGATCATGGAGTT
GCATAAGACATACAGGGGCATGACCCCGGGCGAGGCAGAGATCCACTTCCTGGAGAACGCCAAGAAGCTC
TCCATGTATGGAGTTGACCTGCATCACGCTAAGGATTCTGAGGGCATCGATATCATGCTAGGTGTCTGTG
CCAATGGCCTGCTCATCTACCGGGACCGCCTGAGAATCAACCGCTTTGCCTGGCCCAAGATTCTCAAGAT
CTCCTACAAGAGGAGTAACTTCTACATCAAGATCCGGCCTGGGGAGTATGAGCAGTTTGAGAGCACCATC
GGCTTCAAGCTCCCTAACCACCGCTCAGCCAAGCGGTTGTGGAAGGTCTGCATCGAGCACCACACGTTCT
TCCGGCTGGTGTCACCGGAGCCCCCACCCAAGGGCTTTCTGGTGATGGGCTCCAAGTTCCGGTACAGTGG
GAGGACGCAGGCCCAGACCCGCCAAGCCAGTGCCCTTATCGACCGACCCGCCCCCTTCTTTGAACGTTCT
TCCAGCAAACGCTATACCATGTCCCGCAGCCTTGATGGAGAGTTCTCCCGCCCTGCCTCAGTCAGTGAGA
ATCACGATGCAGGGCCTGACGGTGACAAGCGGGAAGATGACGCCGAGTCAGGGGGACGCCGATCAGAGGC
TGAAGAAGGAGAGGTCAGGACACCCACCAAGATCAAGGAGCTGAAGCCGGAGCAGGAAACCACGCCACGA
CACAAGCAGGAGTTCCTGGACAAGCCAGAGGATGTCTTGTTGAAGCACCAGGCCAGCATCAATGAACTCA
AGAGGACCCTGAAGGAGCCCAACAGCAAACTGATCCACCGGGATCGAGACTGGGATCGGGAGCGCAGGCT
GCCCTCGTCGCCTGCCTCCCCCTCCCCCAAGGGCACCCCGGAAAAAGCCAGTGAGGGCTCAGAGCATTGG
GTATTGATAGAAAGAGTTTACACTAGGCCGGAAGACCTTGGCCTCCTCACAGTGCCCGCCACACAACGGG
AAGAAAGTGGATCAAGCCTCACCGAGATCCTCGCTGATGGGAGACTCTCCAAGGTAGACATTCTGGTGGA
CAAGTTCAAAGTTGAAGTGGCCACAGAAGAAACCGTGAGAGCCCAAAGAACAAGTACTCAGCAGCAAGGG
AAAATGATTGCAAGTCCAGAAGGCTCAGAGACAATGAGAGAGGAAGATGCGTGCCTCAGGGGGGGTCCTA
GAGATGCTACTCGGGCTGCAGGCTACACATCAACAGACAAGCTCAAGCTCAGGAACACCCGAGTCTCAAA
TGGTCAAACAGAGAGCCACGTAGAATTGAACAAGGGTCTGGAGAGGCCCCAGACCTGGGGAAGACTGACG
GCTGCGGGGGTTGGGCCAGTGCAGGGAGAGGTTCTTTCTCCTGCATCAGACAAAGGGGGACTCCAGTCCT
TCCTGTTGGATCCAGCGCAAACAGAAGCCAGAGCTGACTCGAGTGACGAGACTGACACCTCCTTCGCAGA
GAGGAGCTTCTGTCTGAACTACGGAAAGAAAGACTCTGAGGACTCCCTTCTTGCCCCATCCTTAGGGGAC
AGAGAAGAGCACCTGGATGCCCCTCCTGGAGATGGGACCTGGCTGGAGCTGGCTGGGGCGCACACAGAGA
ACTGGGAGCCGAAGTCCTCAGACCCAAGGGCTTCTGCCCCGGGTTCCAGCCAGAATAAAGATGAAGCCCA
TATGGCTTCCTCAGCAGAAGAAGCCTGGTCCCCCAGGGACCGTGGAAGACCTGATGATCTGCAGGGATCA
GCTGTCTGTCAGACTCTGGAAGAGGGCTGGGAAAACACACAAGGGCTGGAAGGAGAGTTGGCCTACCCAG
TGGCCGATGTAGCTGAAGATGAGGCCCCCACGAGTATAGATTGGATGGGAAAGACTGAAAAAAAAAGTCC
TCCGGCAAGATGGAAGAAGAACCCTCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGGGTGCACCTAGATGCTCAGGCGTGTGCCCTTCTGAGGACCATCC
CTCCCTGTGTTAGGAAGCCAGTCAGGCCAGACCAAGCCAGCTTCCTGCCTAAAGAGAAGGGGGCAGTTTC
CACTCATGCAGTAGAACCTGAGACAGAAGACAGGGAGGCAGTCACGCCCCTGCCAGCCTCCTCTGGTCAC
ACTGAGGTCCTGGCAGCCACTTCTCTAAGCCCAGTCCCTCCTAGATCAGGGGAGTCTTCGGAGTCCAGGG
GTTTCATTAGAGATCAGTCCCCCGTGATTCTTAAGTATATCCATCTCCCTGAAGAGAGTCCAGTGCACAA
GGACCCGCAAGGTGAGCGCAAAGCACCTCCAGTGGCCAGCAAGAAGCCCAGAGTTGTCCCTGAAGGAACC
GAGGGGCCTGCCCTCCTGGGGTTGGTGCTCCCTTCAGGAAAGCTGGAGACTTCACTCCAGGATAGGGACC
AAGGAGGTTCCCAGGAAGACGTTAGCAAGACCTCAGTGGCTAACAAAATTCGGATATTTGAGACCCATGG
AGCCGAGCCTTGCAGAGCCAGTCAGGGTGAAGTGAGGACCCTTCCACATGAGCCGCCTTCGGAAGCGTCC
CCAGGACAGGTGGAGGAGCGCAGTAAGCCTCGGGACTTGGGCTTTGTCCAACTCCAGCCTCCTGGGGACT
TGGCCAGCCCCAAAGTTACCTGTTCTTCTGTCATGCCTCTGGCTACCCAGCACTATGGGGAGGCCACCCC
AACTACCTCCCACCAGGAAAGATGCACAGACCCAGAGCTCGTGTCCCCTGACTCAGGCTGTGAAACCACG
CTGGAGGAAGCTACTGGGAGCAAAGCCGGAGATGCGGGCGGGGAAGACAAGAACTCCTTCGGCCGCTTAG
CGCCAAGCACCCCTGGGAAGGGGGGGCGTCTGAGATTCGCCAGCCCTCCGGGCCTTCAGAGAGCAGGGCT
GAGGGAGGGCTCAGAGGAGAAAGTCAAACCACCACGCCCACGTGCCCCAGAGAGCGACACGGGAGATGAG
GACCAGGACCAGGAGAGGGACGCCGTATTCCTGAAGGACAACCACCTGGCCATTGAGCGCAAGTGCTCCA
GCATTACGGTCAGCTCCACGTCCAGCCTGGAGGCTGAGGTGGACTTCACGGTTATTGGTGACTACCATGG
CGGCGCCTTTGAAGACTTCTCCCGAAGCCTCCCTGAGCTTGATCGGGATAAAAGTGACTCTGAGACAGAG
GGCCTGGTGTTCGCCCGGGATCTCAAGGGGCCCTCCAGCCAAGAGGATGAATCTGGGGGCCTCGAGGACA
GCCCGGATCGAGGGGCCTGTTCCACTCCAGAAATGCCCCAGTTTGAGTCTGTGAAAGCAGAAACCATGAC
CGTCAGCAGTCTGGCAATCAGGAAGAAGATTGAGCCAGAGGCCATGCTGCAAAGCAGAGTCTCCGCTGCA
GACAGCACCCAGGTTGATGGGGGTACTCCAATGGTGAAAGACTTCATGACAACTCCCCCCTGCATCACCA
CAGAGACCATCTCAACCACCATGGAGAACAGTCTCAAGTCCGGGAAGGGGGCAGCTGCCATGATCCCAGG
CCCACAGACGGTGGCCACGGAAATCCGTTCTCTTTCACCGATCATCGGGAAAGATGTCCTCACCAGCACG
TACGGCGCCACCGCGGAAACCCTCTCAACCTCTACCACCACCCATGTCACCAAAACTGTGAAGGGAGGGT
TTTCTGAGACAAGGATCGAAAAGCGAATCATCATTACTGGGGATGAAGATGTCGATCAAGACCAGGCCCT
GGCTTTGGCCATCAAGGAAGCCAAACTACAGCATCCAGACATGCTGGTAACCAAAGCTGTTGTCTATAGA
GAAACAGACCCATCCCCGGAGGAGAGAGACAAGAAGCCACAGGAATCCTGA

Translation (1556 aa):
MTTETGPDSEVKKAQEETPQQPEAAAAVTTPVTPAGHSHPETNSNEKHLTQQDTRPAEQSLDMDDKDYSE
ADGLSERTTPSKAQKSPQKIAKKFKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGL
TYCDADSQKNWLDPSKEIKKQIRSSPWNFAFTVKFYPPDPAQLTEDITRYYLCLQLRADIITGRLPCSFV
THALLGSYAVQAELGDYDAEEHVGNYVSELRFAPNQTRELEERIMELHKTYRGMTPGEAEIHFLENAKKL
SMYGVDLHHAKDSEGIDIMLGVCANGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGEYEQFESTI
GFKLPNHRSAKRLWKVCIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDRPAPFFERS
SSKRYTMSRSLDGEFSRPASVSENHDAGPDGDKREDDAESGGRRSEAEEGEVRTPTKIKELKPEQETTPR
HKQEFLDKPEDVLLKHQASINELKRTLKEPNSKLIHRDRDWDRERRLPSSPASPSPKGTPEKASEGSEHW
VLIERVYTRPEDLGLLTVPATQREESGSSLTEILADGRLSKVDILVDKFKVEVATEETVRAQRTSTQQQG
KMIASPEGSETMREEDACLRGGPRDATRAAGYTSTDKLKLRNTRVSNGQTESHVELNKGLERPQTWGRLT
AAGVGPVQGEVLSPASDKGGLQSFLLDPAQTEARADSSDETDTSFAERSFCLNYGKKDSEDSLLAPSLGD
REEHLDAPPGDGTWLELAGAHTENWEPKSSDPRASAPGSSQNKDEAHMASSAEEAWSPRDRGRPDDLQGS
AVCQTLEEGWENTQGLEGELAYPVADVAEDEAPTSIDWMGKTEKKSPPARWKKNPPGGGGGGGGGGGGGG
GGGGGGGGRVHLDAQACALLRTIPPCVRKPVRPDQASFLPKEKGAVSTHAVEPETEDREAVTPLPASSGH
TEVLAATSLSPVPPRSGESSESRGFIRDQSPVILKYIHLPEESPVHKDPQGERKAPPVASKKPRVVPEGT
EGPALLGLVLPSGKLETSLQDRDQGGSQEDVSKTSVANKIRIFETHGAEPCRASQGEVRTLPHEPPSEAS
PGQVEERSKPRDLGFVQLQPPGDLASPKVTCSSVMPLATQHYGEATPTTSHQERCTDPELVSPDSGCETT
LEEATGSKAGDAGGEDKNSFGRLAPSTPGKGGRLRFASPPGLQRAGLREGSEEKVKPPRPRAPESDTGDE
DQDQERDAVFLKDNHLAIERKCSSITVSSTSSLEAEVDFTVIGDYHGGAFEDFSRSLPELDRDKSDSETE
GLVFARDLKGPSSQEDESGGLEDSPDRGACSTPEMPQFESVKAETMTVSSLAIRKKIEPEAMLQSRVSAA
DSTQVDGGTPMVKDFMTTPPCITTETISTTMENSLKSGKGAAAMIPGPQTVATEIRSLSPIIGKDVLTST
YGATAETLSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQALALAIKEAKLQHPDMLVTKAVVYR
ETDPSPEERDKKPQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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