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Report for CCDS89412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89412.1 Public Mus musculus 19 Arl3 23 108 98 CCDS HistoryNCBI Gene:56350Re-query CCDS DB by CCDS ID:89412.1Re-query CCDS DB by GeneID:56350See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236255.1 ENSMUSP00000158118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236255.1Link to Ensembl Protein Viewer:ENSMUSP00000158118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236255Re-query CCDS DB by Protein ID:ENSMUSP00000158118
Original member Current member NCBI NM_001355233.1 NP_001342162.1 Accepted alive Link to Nucleotide Sequence:NM_001355233.1Link to Protein Sequence:NP_001342162.1Re-query CCDS DB by Nucleotide ID:NM_001355233Re-query CCDS DB by Protein ID:NP_001342162Link to BLAST:NP_001342162.1

Chromosomal Locations for CCDS 89412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46541469 46541510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46542352 46542537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46543482 46543532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46551573 46551689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46558238 46558381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46573040 46573042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGG
GCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACC
TACACAGGGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGG
CAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTCATCTATGTAATTGACA
GTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAGGAACTAACGGAATTACTGGAGGAAGAAAAGCTGAG
TTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCA
GAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCG
AGGGCGTCCAGGACGTGTCGCAGCGCTGTGTGGACCAGTCACTCCTGCTCTAG

Translation (180 aa):
MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGG
QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA
EGLNLHTIRDRVWQIQSCSALTGEGVQDVSQRCVDQSLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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