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Report for CCDS89383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89383.1 Public Mus musculus 19 Htr7 23 108 98 CCDS HistoryNCBI Gene:15566Re-query CCDS DB by CCDS ID:89383.1Re-query CCDS DB by GeneID:15566See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166074.1 ENSMUSP00000126150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166074.1Link to Ensembl Protein Viewer:ENSMUSP00000126150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166074Re-query CCDS DB by Protein ID:ENSMUSP00000126150
Original member Current member NCBI NM_001360318.1 NP_001347247.1 Accepted alive Link to Nucleotide Sequence:NM_001360318.1Link to Protein Sequence:NP_001347247.1Re-query CCDS DB by Nucleotide ID:NM_001360318Re-query CCDS DB by Protein ID:NP_001347247Link to BLAST:NP_001347247.1

Chromosomal Locations for CCDS 89383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35969305 35970064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36056706 36057253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGATGGACGTTAACAGCAGCGGCCGCCCCGACCTCTACGGCCATCTCCGCTCTCTCATCCTGCCGGAGG
TGGGGCGCAGGCTGCAGGACCTGAGCCCCGACGGTGGCGCCCACTCGGTGGTGAGCTCCTGGATGCCGCA
CCTGCTGAGCGGCTTCCCAGAGGTGACAGCTAGCCCGGCGCCCACCTGGGACGCGCCCCCGGACAATGTC
TCCGGCTGCGGGGAGCAGATCAACTATGGCAGAGTCGAGAAAGTTGTGATCGGCTCCATCCTGACGCTCA
TCACGCTGCTGACGATCGCGGGCAACTGCCTGGTGGTGATCTCGGTGTGCTTTGTCAAGAAGCTCCGCCA
GCCCTCCAACTACCTGATTGTGTCCCTGGCGCTGGCTGACCTCTCGGTGGCCGTGGCGGTCATGCCTTTC
GTTAGTGTCACGGACCTCATCGGGGGCAAGTGGATCTTCGGCCACTTCTTCTGCAACGTCTTCATCGCCA
TGGACGTCATGTGCTGCACGGCCTCGATCATGACCCTGTGCGTGATCAGCATCGACAGGTACCTTGGGAT
CACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGG
CTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGT
GCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGT
CATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGC
TTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAG
AGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAA
AGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCC
ACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGT
GGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCAC
CTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAA
GCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCTGTAA

Translation (435 aa):
MMDVNSSGRPDLYGHLRSLILPEVGRRLQDLSPDGGAHSVVSSWMPHLLSGFPEVTASPAPTWDAPPDNV
SGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAVMPF
VSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVW
LLSASITLPPLFGWAQNVNDDKVCLISQDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFSG
FPRVQPESVISLNGVVKLQKEVEECANLSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLS
TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYRNINRKLSAAGMHE
ALKLAERPERSEFVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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