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Report for CCDS89329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89329.1 Public Mus musculus 19 Dnajc4 23 108 98 CCDS HistoryNCBI Gene:57431Re-query CCDS DB by CCDS ID:89329.1Re-query CCDS DB by GeneID:57431See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025915.12 ENSMUSP00000025915.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025915.12Link to Ensembl Protein Viewer:ENSMUSP00000025915.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025915Re-query CCDS DB by Protein ID:ENSMUSP00000025915
Original member Current member NCBI NM_001356999.1 NP_001343928.1 Accepted alive Link to Nucleotide Sequence:NM_001356999.1Link to Protein Sequence:NP_001343928.1Re-query CCDS DB by Nucleotide ID:NM_001356999Re-query CCDS DB by Protein ID:NP_001343928Link to BLAST:NP_001343928.1
Original member Current member NCBI NM_001357000.1 NP_001343929.1 Accepted alive Link to Nucleotide Sequence:NM_001357000.1Link to Protein Sequence:NP_001343929.1Re-query CCDS DB by Nucleotide ID:NM_001357000Re-query CCDS DB by Protein ID:NP_001343929Link to BLAST:NP_001343929.1

Chromosomal Locations for CCDS 89329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6987997 6988108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6988189 6988275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6989423 6989587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6989681 6989865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6990718 6990811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6992159 6992301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGACTTTTGGGGGCCTCCCTTTCCTAGCTGCCTGCCCGTCGTCGTCATGCCGTCCCTGTTGCTCCAGC
TGCCCCTGCGCCTATGCCGGCTGTGGCCGCATAGCCTTTCCATCCGACTTCTCACAGCCGCCACAGGGCA
GCGGTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAA
CGTGCTTTTTTCACCAAGTCAAAAGAGCTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCC
GCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCA
GCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACAC
AGCAGCTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGG
AGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGG
CATGGGCCTGCACTATGTTGCCTTCAGGAAGCTGGAGCAGGTGCATCGCAGCTTCATGGATGAAAAGGAC
CGGATCATTACAGCCATCTACAATGACACTCGGGCCAGGGCCAGGGCCAACAGAGCCAGGATTCAGCAGG
AGCGCCAGCAGAGGCAGCAGCCTCGGGCAGAACCCTCCCTGCCTCCAGAAAGCTCCAGGATCATGCCCCA
GGACACAAGCCCCTGA

Translation (261 aa):
MDFWGPPFPSCLPVVVMPSLLLQLPLRLCRLWPHSLSIRLLTAATGQRSVPTNYYELLGVHPGASAEEIK
RAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRNYDHQLHSASPPKSSGSTAEPKYTQQTH
SSSWEPPNAQYWAQFHSVRPQGPESRKQQRKHNQRVLGYCLLLMVAGMGLHYVAFRKLEQVHRSFMDEKD
RIITAIYNDTRARARANRARIQQERQQRQQPRAEPSLPPESSRIMPQDTSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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