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Report for CCDS89316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89316.1 Public Mus musculus 19 Ehbp1l1 23 108 98 CCDS HistoryNCBI Gene:114601Re-query CCDS DB by CCDS ID:89316.1Re-query CCDS DB by GeneID:114601See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236215.1 ENSMUSP00000157990.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236215.1Link to Ensembl Protein Viewer:ENSMUSP00000157990.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236215Re-query CCDS DB by Protein ID:ENSMUSP00000157990
Original member Current member NCBI NM_053252.3 NP_444482.2 Accepted alive Link to Nucleotide Sequence:NM_053252.3Link to Protein Sequence:NP_444482.2Re-query CCDS DB by Nucleotide ID:NM_053252Re-query CCDS DB by Protein ID:NP_444482Link to BLAST:NP_444482.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444482.2 877 Q99MS7-2 877 99.6579% 0 3

Chromosomal Locations for CCDS 89316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5708326 5708425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5708556 5708670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5708758 5708831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5710211 5710310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5710574 5710697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5710793 5710848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5710969 5711038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5715796 5716494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5716896 5716944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5717039 5717196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5720185 5720407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5720564 5720726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5720809 5720877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5721442 5721584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5721667 5721845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5721957 5722010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5722646 5722741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5722950 5723007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5725917 5726020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2634 nt):
ATGACTTCAGTGTGGAAGCGCCTGCAGCGGGTTGGCAAGCGGGCCGCCAAGTTCCAGTTTGTGGCGTGTT
ACCATGAACTGGTGTTGGAGTGCACCAAGAAGTGGCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCG
GAACCGAAGGATCTGCTCCAAGGCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTG
GTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGGGACCCTCATGTGGACCAGTATG
AAACCAAAGAGTGGACTTTTATTATTGAAAATGAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGA
TGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAA
TCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCA
CGGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGA
CTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAG
TCAGATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGG
CAGCTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAG
GGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAG
CCCCCGCCATCCCCACCAGAGACAAGGTCCACTGGGCAGCCAGGCCAGACCATGGTCCCCACCCCAGCCC
CTCGGCTCCGGAAAGGCTCTGATGCACCCTCGTCCCCAGTCCCCTGCAGTGGGGATGAGGTCCCCAATAC
CTCAGAGGATCCTCCAACAGGAATGGGCTCTTCTGGGGAGACCCAGGCTCAGATAAGCTCTCAGGAAGGG
ACAGAGGCCCATGAAGCCAGGCCAGAACCAGACATTGAGGCACCACCTACCCTGGTCAGCTCCAGCCAGT
CCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTC
CTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATCGATTATTTCTCC
CTTGATCCCCTCAACATCAAACAGAACAACAAGCAGGCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTC
GGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTG
CCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGC
ACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGAT
TACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACC
AAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAA
GCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAG
AGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAA
TGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTG
CTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTG
CAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTGGAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAA
CCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCGGTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGC
CTGGGGGAAGAGACAGGCCTGCAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCC
TGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGA
ATCAGGTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAAT
GCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCTCATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAAC
TGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAGAGTGGCAGAAAACAGTTGCGCAGCAGCACCG
CGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGAC
CAGAAGGAACGGATCGCTCTGGAGGAAGATGAGCGCCTAGAACGAGGCCTGGAGCAGAGACGTCGCAAGG
TGAGCCGGCAGCTGAGCAGGCGGGAACGCTGTACCCTGAGCTGA

Translation (877 aa):
MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTV
VWMVPENVDISVTLYRDPHVDQYETKEWTFIIENESKGQRKVLATVDVNLAHHAGPVPAQVPLRLRLKPK
SVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEEEANGPGAPEVRTRGPQ
SDLSRELKTLCEEEDEGHIRPQQAAARPSSAEDTSPAPVSAPAPPVRAFRGQGSEPAAITGGQVGPETPE
PPPSPPETRSTGQPGQTMVPTPAPRLRKGSDAPSSPVPCSGDEVPNTSEDPPTGMGSSGETQAQISSQEG
TEAHEARPEPDIEAPPTLVSSSQSLLEWCQEVTNGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYFS
LDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGSG
TYRVGNAQPSLPDCLDAGDLAQRLREHGAEVPTEPKEAVNRGTGAIPKVASRDTDLSCSSKDGEAEVAQE
AIPQEAPTDGPRARSSTTPVVPAEGLVNGVGASGGVSGVRLRRSSVNGEAGPVPPPRAHGSFSHVRDADL
LKKRRSRLRNSNSFSVDDQDSGAAVGAGPAGPGAVEGPNPASSPDANPLPAPAPQQPPGGPPPTEESSPS
LGEETGLQRFQDTSQYVCAELQALEQEQGQIDGRAAEVEKQLRSLMESGANRLQEEVLIQEWFTLVNKKN
ALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLD
QKERIALEEDERLERGLEQRRRKVSRQLSRRERCTLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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