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Report for CCDS89296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89296.1 Public Mus musculus 18 Fbxo15 23 108 98 CCDS HistoryNCBI Gene:50764Re-query CCDS DB by CCDS ID:89296.1Re-query CCDS DB by GeneID:50764See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223789.2 ENSMUSP00000158102.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223789.2Link to Ensembl Protein Viewer:ENSMUSP00000158102.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223789Re-query CCDS DB by Protein ID:ENSMUSP00000158102
Original member Current member NCBI NM_001367965.1 NP_001354894.1 Accepted alive Link to Nucleotide Sequence:NM_001367965.1Link to Protein Sequence:NP_001354894.1Re-query CCDS DB by Nucleotide ID:NM_001367965Re-query CCDS DB by Protein ID:NP_001354894Link to BLAST:NP_001354894.1

Chromosomal Locations for CCDS 89296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84952134 84952258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84957320 84957430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84958272 84958376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84959069 84959311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84960010 84960219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84962594 84962720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84964109 84964191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84965431 84965585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84977367 84977491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84981122 84981376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGCGAGCGGACGCGGTCGGATGCTGAGGGGATGTTTTGGCCTCCAGGCGCAGCGAGGGTCACTTCATG
GTGGGGGCGCTACCTGGGGCAGCGCGGGACAGGCCGCGGGGCGCTCCGGGTTCAGTTTTAGAAGTAAGTT
TGTTAGAGGCTCATCTGTCACGAAGCAGCATGCCTGGCGAAACCAGCACAGCGAGAAGCGTTGCTCTTCC
TCCATCAGTTCTATATCCCTGGACAGAATGCCATCGGAAATCTTGGTGAAGATACTTTCTTACTTGGATG
CGGTGACCTTGGTGTGCATTGGATGTGTGAGCAGACGCTTTTATCATTTGGCTGATGACAATCTTATTTG
GGTCAGGAAGTACGCAGCTGCATTTAGATCAAAAAGATCACGTTGGAAAGCTACTTCAGTGGAGGAAACA
GCCACAAGTCTGAGCTTGCTGTCAGTTTGGGATAAAGAAGATGGATACTGGAAGAAAGAATATATTACAA
AGCAGATCTCATCTGTGAAAGCAGCCCTCACCAACAGCCTCAGTCCTGTCAAACGCCGCACAAGCCTTCC
TTCGAAAACCAAAGAGTCCCTCAGAATATCTGGCTTAGGTTGGACAATCATCTTAAGAGAAGCCAGTGGC
AAAGAACACATCATGCAGCATTCGAATCTTTCCGTAAATGACAACTCTGTCACTGTTTTTTGGCATGACA
AAAATTGGCCACATGTAGACACGTTGTCCACCCTGGATTTGTATGGTGCCACACCAATTTTTATGGAGCA
GTATAAAGGCCCTAACACAAGTTGTCCACGATGGCTGTCTTTAATTGAAAAGTACGATCTGAGTAATTTA
CGCAAGTCTGCTATGATTGGCTGCGACAGACATGTTCGGGTATTCTGTGTAAATCCTGGCCTCCTGGTGG
GGCTGTGGCAGGAGAATGGTGGACTAGCTTTTGTCATGGCAAATATTCATTCCCATGGCCTTTTCGAGAG
AAGCATAATGGGCTCAGACACTATTCCCTATACATTGCCTCCCGACACTACATTTGTGGATAACTACCCA
GACTCAATGACCTTTTATGGAGATAAAGGCTTTCAGCTGCATATCGACATTCATGGCAGTAAGACTTACT
TCCTGTGTAGCACCTTCCACAATCTCTTCTGCAGGAGAGCGGGCATTAACAATGGATATGTGAAGTTCTT
GATGATAAACTTAAAAAATAACAGAGAACACCTACCTCTTGTTGGAAAAGTTGGCCTTGAATGGAGAACT
GACTGTTTAAATGGCCGTATTGAGAGTTGCATTGTAGTGGATATGACCTTGCTGGATGAGGACAAGAAGC
CCATCTGGTATGTGAGTTCTCCAGTGTGCTTGAGATCTGCCTGCCTTCCTGATTTCCCGCAGCCGGCTTA
CTCTTTCGAGTACATGGACAGCGTAGGAGGAGTGTGCGCAGACCTAGGGTGGTTTGAAAATACCGATGAA
TACTTCATTGTCAGACTGGACATTTACCTCAGTGTAGCAAAATTACAACAATGGTTTGGGAGGCAATAA

Translation (512 aa):
MASGRGRMLRGCFGLQAQRGSLHGGGATWGSAGQAAGRSGFSFRSKFVRGSSVTKQHAWRNQHSEKRCSS
SISSISLDRMPSEILVKILSYLDAVTLVCIGCVSRRFYHLADDNLIWVRKYAAAFRSKRSRWKATSVEET
ATSLSLLSVWDKEDGYWKKEYITKQISSVKAALTNSLSPVKRRTSLPSKTKESLRISGLGWTIILREASG
KEHIMQHSNLSVNDNSVTVFWHDKNWPHVDTLSTLDLYGATPIFMEQYKGPNTSCPRWLSLIEKYDLSNL
RKSAMIGCDRHVRVFCVNPGLLVGLWQENGGLAFVMANIHSHGLFERSIMGSDTIPYTLPPDTTFVDNYP
DSMTFYGDKGFQLHIDIHGSKTYFLCSTFHNLFCRRAGINNGYVKFLMINLKNNREHLPLVGKVGLEWRT
DCLNGRIESCIVVDMTLLDEDKKPIWYVSSPVCLRSACLPDFPQPAYSFEYMDSVGGVCADLGWFENTDE
YFIVRLDIYLSVAKLQQWFGRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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