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Report for CCDS89292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89292.1 Public Mus musculus 18 Tshz1 23 108 98 CCDS HistoryNCBI Gene:110796Re-query CCDS DB by CCDS ID:89292.1Re-query CCDS DB by GeneID:110796See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000175783.2 ENSMUSP00000157454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175783.2Link to Ensembl Protein Viewer:ENSMUSP00000157454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175783Re-query CCDS DB by Protein ID:ENSMUSP00000157454
Original member Current member NCBI NM_001364993.1 NP_001351922.1 Accepted alive Link to Nucleotide Sequence:NM_001364993.1Link to Protein Sequence:NP_001351922.1Re-query CCDS DB by Nucleotide ID:NM_001364993Re-query CCDS DB by Protein ID:NP_001351922Link to BLAST:NP_001351922.1
Original member Current member NCBI NM_001364994.1 NP_001351923.1 Accepted alive Link to Nucleotide Sequence:NM_001364994.1Link to Protein Sequence:NP_001351923.1Re-query CCDS DB by Nucleotide ID:NM_001364994Re-query CCDS DB by Protein ID:NP_001351923Link to BLAST:NP_001351923.1

Chromosomal Locations for CCDS 89292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84013027 84015489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGAACGAGACAGGCCACTATCGAGATGACAACAGAGACAAGGACTCCGAGAAGACCAAGCGGTGGTCCA
AGCCCAGGAAGCGTTCCCTGATGGAGATGGAGGGGAAGGAGGACGCCCAGAAGGTGCTGAAGTGTATGTA
CTGCGGACACTCCTTCGAGTCCTTGCAAGACCTCAGTGTCCACATGATCAAAACAAAGCATTACCAGAAA
GTGCCTCTGAAGGAGCCCGTGCCAGCCATCACCAAACTGGTCCCTTCCACCAAGAAGCGAGCACTCCAGG
ACCTGGCATCCCCTTGTTCCCCAGAGCCCACGGGCGTGGCCACTGAGGTTGCACTGAGTGAGTCAGCCAA
GGACCAGAAAACGGCCAACCCGTACGTGACTCCGAACAACCGTTACGGCTACCAGAATGGTGCTAGTTAC
ACGTGGCAGTTCGAGGCCCGCAAAGCCCAGATACTCAAGTGCATGGAATGTGGCAGCTCCCATGATACCT
TGCAGCAGCTCACAGCCCACATGATGGTCACTGGCCATTTCTTAAAGGTGACAACCTCTGCCTCCAAGAA
AGGAAAGCAGCTGGTGTTGGACCCCGTGGTGGAGGAGAAGATCCAGTCCATCCCGTTGCCCCCGACCACT
CACACCCGGCTGCCTGCCTCTAGCATCAAGAAGCAACCGGACTCTCCTGCGGGCTCTGTAGCCTCAGAAG
AGAAGAAGGAACCTGAGAAGGAGAAGGAAAAGGAGAAAGCCCCACCGGCAGCTGGGGATGCAGAGAGAAA
AATCAAAGAGGAGACTGAAGATGCCACTGAGAAGTTTGAGCCCACTGCCCTTTATCAGTACCTGCGTGAG
GAAGACCTAGATGACAGCCCCAAGGGAGGAGTAGATATCCTAAAGTCACTCGAGAACACTGTGTCCACGG
CCATCAGTAAAGCCCAGAATGGGGCACCCTCATGGGGTGGGTACCCCAGCATCCATGCAGCCTACCAGCT
GCCAGGCACAGTGAAGCCACTGCAGTCTGCTGTGCAGAGCGTGCAAATACAGCCGTCTTACGCCAGCAGC
GTGAAGTCACTGTCCTCCACAGAGCACAATGCCCTCCTACACTCCCCAGGGAGCCTCACCCCGCCACCCC
ATAAGAGCAATGTGTCTGCCATGGAGGAGTTAGTAGAGAAGGTCACGGGCAAGGTCAGCATCAAGAAGGA
GGAGAGGCCTACTGAGAAGGAGAAGAGCTCCCCTGTCAAAGCCATCTCTCCTGTGGCAAAGGAGAATAAA
GATCTTCCTAAGACAGAGGAGACCGGGAGCAAGCCACAGAAGAAGGGCTCGGATTCAGAAACTGGGAAGG
CCAAAAAGGAGAGTACATTGGACGCTCACACCCCAAATGGTACAGAACCTCTTAAAGCCAAGGTCACCAA
TGGCTGCGGCCATCTGGGTATCATCACGGACCACTCGCCGGAGCCTTCTTTCATCAACCCTCTAAGCGCT
CTGCAGTCCATCATGAACACCCACCTAGGAAAGGTGTCCAAGCCCGTGAGCCCCTCTCTGGATCCACTGG
CGATGCTCTACAAGATCAGCAACAGCATGCTGGACAAGCCCGTCTACCCCACGACCCCTGCCAAGCAGGC
TGATGCAATCGACCGCTACTACTATGAGAACAGCGACCAGCCCATTGATCTGACCAAGTCTAAGAACAAG
CCACTGGTCTCGGGTGTGGCAGATGCTGTGTCCTCGCCTCTGCGGGAGAGCGCCCTCATGGATATCTCGG
ACATGGTGAAAAATCTCACAGGTCGTCTGACTCCCAAGTCCTCCACACCCTCCACGGTGTCAGAGAAGTC
AGATGCAGATGGGAGCAGCTTTGAGGAGGCCCTGGACGAGCTGTCACCTGTTCACAAGAGAAAGGGGCGC
CAGTCCAATTGGAACCCACAACACCTGCTCATCCTGCAGGCTCAGTTTGCCTCCAGCCTTCGAGAGACAG
CAGAAGGGAAATACATCATGTCAGACCTGGGCCCTCAGGAGCGGGTGCACATCTCCAAGTTCACGGGCCT
ATCCATGACCACCATCAGTCACTGGCTGGCCAACGTGAAGTACCAGCTGCGGAGGACAGGGGGAACCAAG
TTCCTTAAGAACCTCGACACAGGGCATCCTGTTTTCTTTTGTAATGATTGTGCCTCTCAGTTCAGAACTG
CCTCCACGTACGTCAGTCACCTGGAGACGCACCTAGGCTTCAGCTTGAAGGACCTCTCCAAGCTGCCACT
CAGTCAGATACAAGAGCAGCAGAGTGTCGTCTCCAAAGCCCTCACCAACAAGACTCTGGGCCCGCTGGGC
TCCTCCGAGGAAGACCTGGGCTCCACATTCCAATGCAAGCTCTGCAACCGGACTTTTGCGAGCAAGCACG
CAGTAAAACTGCACCTTAGTAAGACGCACGGCAAGTCGCCAGAGGACCACCTGATCTACGTGACAGAGCT
GGAGAAGCAATAG

Translation (820 aa):
MNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK
VPLKEPVPAITKLVPSTKKRALQDLASPCSPEPTGVATEVALSESAKDQKTANPYVTPNNRYGYQNGASY
TWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTT
HTRLPASSIKKQPDSPAGSVASEEKKEPEKEKEKEKAPPAAGDAERKIKEETEDATEKFEPTALYQYLRE
EDLDDSPKGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQSAVQSVQIQPSYASS
VKSLSSTEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVSIKKEERPTEKEKSSPVKAISPVAKENK
DLPKTEETGSKPQKKGSDSETGKAKKESTLDAHTPNGTEPLKAKVTNGCGHLGIITDHSPEPSFINPLSA
LQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPTTPAKQADAIDRYYYENSDQPIDLTKSKNK
PLVSGVADAVSSPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGR
QSNWNPQHLLILQAQFASSLRETAEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTK
FLKNLDTGHPVFFCNDCASQFRTASTYVSHLETHLGFSLKDLSKLPLSQIQEQQSVVSKALTNKTLGPLG
SSEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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