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Report for CCDS89268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89268.1 Public Mus musculus 18 Psmg2 23 108 98 CCDS HistoryNCBI Gene:107047Re-query CCDS DB by CCDS ID:89268.1Re-query CCDS DB by GeneID:107047See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235799.1 ENSMUSP00000157785.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235799.1Link to Ensembl Protein Viewer:ENSMUSP00000157785.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235799Re-query CCDS DB by Protein ID:ENSMUSP00000157785
Original member Current member NCBI NM_001368147.1 NP_001355076.1 Accepted alive Link to Nucleotide Sequence:NM_001368147.1Link to Protein Sequence:NP_001355076.1Re-query CCDS DB by Nucleotide ID:NM_001368147Re-query CCDS DB by Protein ID:NP_001355076Link to BLAST:NP_001355076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355076.1 224 Q9EST4-3 224 100% 0 0

Chromosomal Locations for CCDS 89268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67644372 67644480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67645993 67646051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67648128 67648246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67648773 67648946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67653153 67653273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67653886 67653978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTGTAAGATTGGTTATTTCTATACTGATTGCCTGGTGCCAATGGTTGGAAACAATCCATATGCAACTG
AAGAAGAAAATTCAAATGAGCTCAGTATAAATACTGAAGTGTATTCCTTACCGTCAAAGAAGCTAGTGGT
GCTTCAGTTAAGGTCCATCTTTATTAAGTACAAATCGAAGTCATTCTGTGAAAAGCTGCTGGCCTGGGTG
GAAAGCAGCGGCTGTGCCAGGATCATTGTTCTCTCAAGCAGCCATTCGTATCACCGCAACGATGCCCAGC
TGCGCAGTACTCCCTTCCGGTATCTGCTTACACCTTGTTTGCAAAAGAGTGTTCAGAATAAAATAAAGAG
CCTGAACTGGCTAGAAATGGAAAAGAGTCGGTGCATCCCTGAGATGAGCGATTCTGAGTTTTGTATTCGC
ATTCCTGGAGGTGGAATCACAAAAACGCTCTATGACGAAAGCTGTTCTAAAGAGATCCAGATGGCAGTTC
TGCTAAAATTTGTTTCAGAAGGGGACAATATCCCAGATGCCGTCAGCCTTGTGGAGTACCTTAATGAATG
GCTTCAGATAATCAAACCCTGTAACGACGGCCCCATGGCATCTGCCCTGCCTTGGAAGATCCCCAGCTCT
TGGCGGCTGCTCTTTGGCAGTGGGCTTCCTCCCGCGCTGTTTTGA

Translation (224 aa):
MCKIGYFYTDCLVPMVGNNPYATEEENSNELSINTEVYSLPSKKLVVLQLRSIFIKYKSKSFCEKLLAWV
ESSGCARIIVLSSSHSYHRNDAQLRSTPFRYLLTPCLQKSVQNKIKSLNWLEMEKSRCIPEMSDSEFCIR
IPGGGITKTLYDESCSKEIQMAVLLKFVSEGDNIPDAVSLVEYLNEWLQIIKPCNDGPMASALPWKIPSS
WRLLFGSGLPPALF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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