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Report for CCDS89101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89101.1 Public Mus musculus 17 Cyp39a1 23 108 98 CCDS HistoryNCBI Gene:56050Re-query CCDS DB by CCDS ID:89101.1Re-query CCDS DB by GeneID:56050See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233437.1 ENSMUSP00000156567.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233437.1Link to Ensembl Protein Viewer:ENSMUSP00000156567.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233437Re-query CCDS DB by Protein ID:ENSMUSP00000156567
Original member Current member NCBI NM_001285947.1 NP_001272876.1 Accepted alive Link to Nucleotide Sequence:NM_001285947.1Link to Protein Sequence:NP_001272876.1Re-query CCDS DB by Nucleotide ID:NM_001285947Re-query CCDS DB by Protein ID:NP_001272876Link to BLAST:NP_001272876.1

Chromosomal Locations for CCDS 89101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43667609 43667794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43676831 43676966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43680124 43680298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43685186 43685276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43691634 43691738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43701477 43701567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43725515 43725648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43730972 43731067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43731925 43732013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43746525 43746612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43749904 43749975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGGCATTATGGAGTTATTCTCACCAATAGCAATCGCCGTTCTGGGAAGCTGTGTTCTTTTCTTATTCT
CTCGGTTGAAGAATTTGCTTGGACCCCCGTGCATCCAAGGCTGGATTCCCTGGATTGGAGCTGGACTTGA
GTTTGGGAAAGCCCCTCTTGAATTTATAGAAAAAGCAAGAATCAAGTATGGACCGGTATTTACCATCTTT
GCTATGGGAAACCGAATGACCTTTGTTAGTGAAGAAGAAGGAATCAATGTGCTTCTAAAATCTGAACATG
TAGATTTTGAATCAGCAGTACAAAGTCCTGTCTATCACACAGCATGGATTCCAAAGAATGTCTTCTCTGC
ACTGCATGAGCGACTGTATGCCTTGATGAAAGGGAAGATGGGAACTTTCAACACACATCACTTTACTGGG
CCGCTAACTGAAGAACTTCATGAGCAACTGGAAGGTTTAGGCACTCATGGAACAATGGACCTGAATGACT
TTGTAAGAAACTGGTCAAAATCCAAAAGATGGCTCCTGGCGCTGTTTGAGAAAAATATTGGCAACATAAA
AGCTCACGGATCTGCAGGTCATTCTGGAACCCTCTTGCAGGCCATATTGGAAGTGGTGGAGACGGAAACA
CGTCAATACAGTCCAAATTATGGACTGGTCGTACTTTGGGCTGCTCTGGCCAATGCTCCTCCTATTGCAT
TCTGGACACTTGGATATATCCTGTCTCATCCCGATATCCACAGGACTGTTTTAGAAAGCATATCTTCTGT
GTTTGGCACTGCAGGTAAAGACAAGATTAAAGTGTCTGAAGATGACCTGAAGAAGCTTCTAATAATTAAG
TGGTGCATTCTGGAATCTGTCCGCTTGAGAGCCCCTGGTGTCATTACTAGAAAGGTAGTGAAGCCAGTTA
AAATTCTGAATCACACAGTTCCTTCTGGTGATCTGCTGATGTTGTCTCCATTCTGGCTACACAGAAATCC
AAAATATTTTCCTGAACCTGAGTCATTCAAACCTGAACGCTGGAAAGAGGCAAATTTAGATAAGTACATT
TTCTTGGACTACTTCATGGCATTTGGAGGCGGGAAGTTCCAGTGTCCTGGAAGGTGGTTTGCTCTCTTAG
AGATTCAACTATGCATTATCTTAGTGCTGTATAAGTACGAATGCAGTCTTCTGGACCCATTACCAAAGCA
GAGTTCTCGTCATTTGGTGGGTGTCCCCCAGCCTGCAGGGAAATGCCGGATTGAATATAAACAAAGAGCT
TGA

Translation (420 aa):
MGIMELFSPIAIAVLGSCVLFLFSRLKNLLGPPCIQGWIPWIGAGLEFGKAPLEFIEKARIKYGPVFTIF
AMGNRMTFVSEEEGINVLLKSEHVDFESAVQSPVYHTAWIPKNVFSALHERLYALMKGKMGTFNTHHFTG
PLTEELHEQLEGLGTHGTMDLNDFVRNWSKSKRWLLALFEKNIGNIKAHGSAGHSGTLLQAILEVVETET
RQYSPNYGLVVLWAALANAPPIAFWTLGYILSHPDIHRTVLESISSVFGTAGKDKIKVSEDDLKKLLIIK
WCILESVRLRAPGVITRKVVKPVKILNHTVPSGDLLMLSPFWLHRNPKYFPEPESFKPERWKEANLDKYI
FLDYFMAFGGGKFQCPGRWFALLEIQLCIILVLYKYECSLLDPLPKQSSRHLVGVPQPAGKCRIEYKQRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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