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Report for CCDS89073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89073.1 Public Mus musculus 17 Rxrb 23 108 98 CCDS HistoryNCBI Gene:20182Re-query CCDS DB by CCDS ID:89073.1Re-query CCDS DB by GeneID:20182See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174299.8 ENSMUSP00000133775.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174299.8Link to Ensembl Protein Viewer:ENSMUSP00000133775.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000174299Re-query CCDS DB by Protein ID:ENSMUSP00000133775
Original member Current member NCBI NM_011306.4 NP_035436.1 Accepted alive Link to Nucleotide Sequence:NM_011306.4Link to Protein Sequence:NP_035436.1Re-query CCDS DB by Nucleotide ID:NM_011306Re-query CCDS DB by Protein ID:NP_035436Link to BLAST:NP_035436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035436.1 520 P28704-1 520 100% 0 0

Chromosomal Locations for CCDS 89073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34031998 34032223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34032827 34033044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34033555 34033711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34034022 34034201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34035654 34035826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34036325 34036454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34036625 34036757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34036873 34036964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34037167 34037272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34037384 34037531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGTCTTGGGCCACTCGTCCGCCCTTCCTCCCGCCGCGGCATGCCGCGGGGCAGTGTGGGCCGGTGGGGG
TG
AGAAAAGAGATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGGCGGCCCTGGCTGGATCCCGCGGC
G
GCGGCGGCGGCGGCCGGAGAGCAGCAAGCCCTGGAGCCGGAGCCGGGGGAGGCTGGCCGGGACGGGATG
GGC
GACAGCGGGCGGGATTCCCGAAGCCCAGACAGCTCCTCCCCAAATCCCCTTTCTCAGGGGATCCGTC
CG
TCTTCTCCTCCTGGCCCACCTCTTACCCCTTCAGCACCTCCACCTCCAATGCCACCCCCGCCACTGGG
C
TCCCCCTTCCCAGTCATCAGTTCTTCCATGGGGTCCCCTGGTCTGCCCCCTCCGGCTCCCCCAGGATTC
TCC
GGGCCTGTCAGCAGCCCTCAGATCAACTCCACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTG
AA
GATGTGAAGCCACCGGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGTCCTGGGGC
T
GGCAAACGGCTCTGTGCAATCTGCGGGGACCGAAGCTCAGGCAAGCACTATGGGGTTTACAGCTGCGAG
GGC
TGCAAGGGTTTCTTCAAGCGCACCATTCGGAAGGACCTGACCTACTCGTGTCGTGATAACAAAGACT
GT
ACAGTGGACAAGCGCCAGCGGAATCGCTGTCAGTACTGTCGCTATCAGAAGTGCCTGGCCACTGGCAT
G
AAAAGGGAGGCGGTTCAGGAGGAGCGTCAACGGGGGAAGGACAAAGACGGGGATGGAGATGGGGCTGGG
GGA
GCCCCTGAGGAGATGCCTGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAGCAGAAGAGTGACC
AA
GGCGTTGAGGGTCCTGGGGCCACCGGGGGTGGTGGCAGCAGCCCAAATGACCCAGTGACTAACATCTG
C
CAGGCAGCTGACAAACAGCTGTTCACACTCGTTGAGTGGGCAAAGAGGATCCCGCACTTCTCCTCCCTA
CCT
CTGGACGATCAGGTCATACTGCTGCGGGCAGGCTGGAACGAGCTCCTCATTGCGTCCTTCTCCCATC
GG
TCCATTGATGTCCGAGATGGCATCCTCCTGGCCACGGGTCTTCATGTGCACAGAAACTCAGCCCATTC
C
GCAGGCGTGGGAGCCATCTTTGATCGGGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATG
GAC
AAGACAGAGCTTGGCTGCCTGCGGGCAATCATACTGTTTAATCCAGACGCCAAGGGCCTCTCCAACC
CT
GGAGAGGTGGAGATCCTTCGGGAGAAGGTGTACGCCTCACTGGAGACCTATTGCAAGCAGAAGTACCC
T
GAGCAGCAGGGCCGGTTTGCCAAGCTGCTGTTACGTCTTCCTGCCCTCCGCTCCATCGGCCTCAAGTGT
CTG
GAGCACCTGTTCTTCTTCAAGCTCATTGGCGACACCCCCATTGACACCTTCCTCATGGAGATGCTTG
AG
GCTCCCCACCAGCTAGCCTGA


Translation (520 aa):
MSWATRPPFLPPRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAGEQQALEPEPGEAGRDGM
G
DSGR
DSRSPDSSSPNPLSQGIRPSSPPGPPLTPSAPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGF
S
GPVSSPQ
INSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCE
G
CKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKRE
AVQEERQRGKDKDGDGDGAG
G
APEEMPVDRILEAELAVEQKSDQGVEGPGATGGGGSS
PNDPVTNICQAADKQLFTLVEWAKRIPHFSSL
P
LDDQVILLRA
GWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRM
D
KTELGCLRAIILFNP
DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKC
L
EHLFFFKLIGDTPIDTFLMEMLEAPHQLA




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser