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Report for CCDS88948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88948.1 Public Mus musculus 16 Epha3 23 108 98 CCDS HistoryNCBI Gene:13837Re-query CCDS DB by CCDS ID:88948.1Re-query CCDS DB by GeneID:13837See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232049.1 ENSMUSP00000155946.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232049.1Link to Ensembl Protein Viewer:ENSMUSP00000155946.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232049Re-query CCDS DB by Protein ID:ENSMUSP00000155946
Original member Current member NCBI NM_001362452.1 NP_001349381.1 Accepted alive Link to Nucleotide Sequence:NM_001362452.1Link to Protein Sequence:NP_001349381.1Re-query CCDS DB by Nucleotide ID:NM_001362452Re-query CCDS DB by Protein ID:NP_001349381Link to BLAST:NP_001349381.1

Chromosomal Locations for CCDS 88948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 63546131 63546236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63552490 63552645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63566579 63566772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63568388 63568537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63583388 63583597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63584957 63585018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63595558 63595743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63598190 63598315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63602261 63602328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63603531 63603633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63610946 63611105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63612850 63612974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63652215 63652550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63653423 63653578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63772910 63773570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63844103 63844167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 63863960 63864047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2952 nt):
ATGGATTGTCACCTCTCCATCCTCGTCCTGCTCGGCTGCTGCGTCCTCAGCTGCTCCGGAGAACTGAGCC
CACAGCCTTCCAACGAAGTTAATCTACTAGATTCGAAAACAATTCAAGGAGAGCTGGGCTGGATCTCCTA
CCCATCCCATGGGTGGGAAGAGATCAGTGGTGTTGATGAACATTACACACCAATCAGGACTTACCAGGTG
TGCAATGTCATGGATCACAGCCAAAATAATTGGCTGAGGACAAACTGGGTACCCAGAAACTCAGCTCAGA
AGATCTATGTGGAGCTAAAGTTCACACTGCGGGACTGTAACAGCATTCCATTGGTTTTGGGGACTTGCAA
GGAGACCTTTAACCTGTACTACATGGAGTCTGATGATGATCATGGCGTCAAATTCCGAGAGCATCAGTTC
ACGAAGATTGACACCATTGCCGCTGATGAAAGTTTCACTCAGATGGATCTCGGGGATCGCATTCTGAAAC
TCAACACTGAGATTAGAGAAGTGGGACCAGTCAACAAAAAGGGGTTTTATTTGGCCTTTCAAGATGTTGG
TGCTTGTGTTGCCTTGGTGTCTGTGAGAGTGTACTTCAAAAAGTGCCCGTTTACAGTGAAGAATCTGGCT
ATGTTTCCAGACACAGTGCCCATGGACTCCCAGTCTTTGGTGGAGGTTAGGGGCTCTTGTGTCAATAATT
CCAAAGAGGAGGACCCTCCCAGGATGTACTGCAGCACAGAAGGGGAATGGCTGGTCCCCATTGGCAAATG
CACTTGCAATGCTGGGTATGAAGAACGAGGTTTCATATGCCAAGCTTGTCGACCAGGCTTCTACAAGGCT
TCCGATGGTGCTGCTAAGTGTGCTAAGTGCCCACCACACAGCTCAACACAAGAAGATGGTTCAATGAACT
GCAGGTGTGAGAATAATTATTTCCGGGCAGAAAAAGACCCTCCATCCATGGCTTGTACCCGACCTCCATC
CGCACCAAGAAATGTTATCTCAAACATAAACGAGACCTCGGTTATCCTGGACTGGAGTTGGCCCCTGGAC
ACAGGAGGCCGGAAGGATATTACCTTCAACATCATATGTAAAAAGTGTGGGTGGAATGTCAGGCAGTGTG
AGCCGTGCAGCCCCAACGTCCGCTTCCTTCCTCGGCAGCTTGGACTCACCAACACCACGGTGACAGTGAC
AGACCTCCTAGCTCACACCAACTACACCTTTGAGATCGATGCTGTTAATGGGGTGTCAGAGCTGAGCTCG
CCACCGAGACAGTATGCCGCAGTCAGCATCACAACTAATCAGGCTGCTCCATCACCAGTTATGACAATTA
AGAAAGATCGGACTTCCAGAAACAGTATCTCTTTATCTTGGCAAGAACCGGAACATCCAAATGGAATTAT
CCTGGACTATGAGGTCAAATACTATGAAAAGGAGCAAGAGACGAGTTATACCATTTTGAGAGCAAGAGGC
ACAAATGTTACTATCAGTAGCCTCAAGCCAGATACTACTTATGTCTTCCAAATCCGAGCTCGGACAGCAG
CGGGATATGGAACCAACAGCCGCAAATTTGAATTTGAAACTAGCCCAGACTCTTTCTCCATCTCCGGTGA
AAACAGTCATGTGGTGATGATTGCTATTTCCGCAGCTGTGGCCATCATTGTCCTCACGGTGGTCACCTAT
GTTCTGGTCGGGAGGTTTTGTGGCTATCACAAGTCAAAACACAGTGCAGAGGAGAAGCGCCTTCACTTTG
GGAATGGCCACTTAAAACTTCCAGGTCTCAGGACCTATGTTGATCCACATACATATGAAGACCCTACTCA
AGCAGTTCATGAGTTCGCGAAGGAGTTGGATGCCACCAATATATCCATCGACAAAGTTGTTGGAGCAGGT
GAATTTGGAGAAGTTTGCAGCGGCCGCTTAAAACTTCCTTCAAAAAAAGAGATTTCGGTGGCCATAAAGA
CCCTGAAAGTAGGGTATACCGAGAAACAGAGGAGAGACTTCCTCGGTGAAGCGAGCATCATGGGACAGTT
TGACCATCCCAACATCATCCGACTGGAAGGCGTTGTCACTAAGAGTAAGCCAGTGATGATTGTCACGGAA
TACATGGAGAATGGCTCCTTGGACAGTTTCTTACGTAAGCACGATGCCCAGTTCACAGTCATCCAGCTTG
TGGGAATGCTCCGTGGGATAGCATCAGGTATGAAATACCTCTCAGATATGGGCTACGTCCACCGGGACCT
TGCTGCTCGCAACATCTTGATCAACAGTAACTTAGTGTGTAAAGTTTCTGACTTTGGACTCTCTCGGGTA
CTTGAAGATGACCCAGAAGCTGCTTACACAACCAGGGGAGGAAAGATACCAATAAGGTGGACATCACCAG
AAGCAATTGCCTACCGCAAGTTCACCTCAGCCAGCGATGTATGGAGTTACGGGATTGTTCTCTGGGAAGT
GATGTCTTACGGAGAAAGGCCATACTGGGAGATGTCCAATCAGGATGTAATTAAGGCTGTGGATGAGGGC
TATCGCCTGCCACCTCCCATGGATTGCCCAGCTGCCTTGTATCAGTTGATGTTGGACTGCTGGCAGAAAG
ACAGGAACAACAGACCCAAGTTCGAGCAGATCGTCAGCATTCTGGACAAACTCATCCGGAATCCAGGCAG
TCTGAAGATCATCACCAGCGCGGCTGCAAGGCCATCAAACCTTCTTCTGGACCAAAGCAATGTCGATATC
GCTACCTTCCACACAACTGGTGATTGGCTTAACGGCATGAGGACAGCACACTGTAAGGAAATCTTCACAG
GCGTCGAATACAGCTCCTGTGACACCATTGCCAAGATCTCCACAGATGACATGAAAAAGGTTGGTGTCAC
TGTGGTTGGGCCACAGAAGAAGATCATCAGCACCATTAAAGCTCTAGAAACACAATCTAAGAATGGTCCA
GTTCCAGTGTAA

Translation (983 aa):
MDCHLSILVLLGCCVLSCSGELSPQPSNEVNLLDSKTIQGELGWISYPSHGWEEISGVDEHYTPIRTYQV
CNVMDHSQNNWLRTNWVPRNSAQKIYVELKFTLRDCNSIPLVLGTCKETFNLYYMESDDDHGVKFREHQF
TKIDTIAADESFTQMDLGDRILKLNTEIREVGPVNKKGFYLAFQDVGACVALVSVRVYFKKCPFTVKNLA
MFPDTVPMDSQSLVEVRGSCVNNSKEEDPPRMYCSTEGEWLVPIGKCTCNAGYEERGFICQACRPGFYKA
SDGAAKCAKCPPHSSTQEDGSMNCRCENNYFRAEKDPPSMACTRPPSAPRNVISNINETSVILDWSWPLD
TGGRKDITFNIICKKCGWNVRQCEPCSPNVRFLPRQLGLTNTTVTVTDLLAHTNYTFEIDAVNGVSELSS
PPRQYAAVSITTNQAAPSPVMTIKKDRTSRNSISLSWQEPEHPNGIILDYEVKYYEKEQETSYTILRARG
TNVTISSLKPDTTYVFQIRARTAAGYGTNSRKFEFETSPDSFSISGENSHVVMIAISAAVAIIVLTVVTY
VLVGRFCGYHKSKHSAEEKRLHFGNGHLKLPGLRTYVDPHTYEDPTQAVHEFAKELDATNISIDKVVGAG
EFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTE
YMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRV
LEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG
YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLLDQSNVDI
ATFHTTGDWLNGMRTAHCKEIFTGVEYSSCDTIAKISTDDMKKVGVTVVGPQKKIISTIKALETQSKNGP
VPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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