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Report for CCDS88878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88878.1 Public Mus musculus 16 Ntan1 23 108 98 CCDS HistoryNCBI Gene:18203Re-query CCDS DB by CCDS ID:88878.1Re-query CCDS DB by GeneID:18203See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115805.2 ENSMUSP00000111472.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115805.2Link to Ensembl Protein Viewer:ENSMUSP00000111472.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115805Re-query CCDS DB by Protein ID:ENSMUSP00000111472
Original member Current member NCBI NM_001346106.1 NP_001333035.1 Accepted alive Link to Nucleotide Sequence:NM_001346106.1Link to Protein Sequence:NP_001333035.1Re-query CCDS DB by Nucleotide ID:NM_001346106Re-query CCDS DB by Protein ID:NP_001333035Link to BLAST:NP_001333035.1

Chromosomal Locations for CCDS 88878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13819356 13819436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13826883 13826985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13827060 13827125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13827388 13827496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13829005 13829078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13831118 13831171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13831607 13831660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13832337 13832434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13835135 13835314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGCCACTGCTGGTGGATGGGCAGCGCGTCCGTCTGCCACGGTCCGCTGTGGAGCTGGTCCGGGCGCACC
CGCCTCTGGAGGAAAGAGCCAGACTTCTCAGAGGTCAGTCTGTTCAACAAGTGGGACCCCAGGGCCTTCT
GTATGTTCAGCAAAGAGAGCTTGCAGTGACCTCCCCAAAGGATGGCTCCATCTCCATTCTGGGTTCTGAT
GATGCTACCACTTGTCACATTGTAGTCCTGAGACATACAGGAAATGGGGCAACCTGCCTGACACATTGTG
ATGGATCTGACACCAAAGCTGAAGTCCCCTTGATAATGAGCTCCATAAAATCCTTCTCTGAACATGCTGA
GTGTGGAAGGCTGGAAGTACATCTTGTGGGAGGCTTCAGTGATGACAGGCAGCTGTCACAGAAACTTACT
CATCAGCTTCTCAGTGAATTTGACAAACAGGATGATGACATTCACTTAGTGACATTATGTGTAACAGAGT
TAAATGACCGTGAAGAAAATGAAAATCACTTTCCAATCATTTATGGCATCGCTGTCAACATTAAAACTGC
AGAGATTTACAGAGCTTCCTTTCAAGATCGTGGTCCAGAGGAGCAACTGCGTGCTGCAAGAGCTTTAGCA
GGAGGCCCAAGCCTTTCCACGTCTCCTCTGGCCGAGCCCCCCCACTTTGTTGAACATATTAGATCTACCT
TGATGTTTTTAAAAAAATTCCCATCTCCAGAGAATATACTCTTTCCTGGAAATAAAGCTCTCCTCTACAA
AAAAAATAAAGATGGCTTGTGGGAAAAGATCTCCTCTCCAGGGAGCTAA

Translation (272 aa):
MPLLVDGQRVRLPRSAVELVRAHPPLEERARLLRGQSVQQVGPQGLLYVQQRELAVTSPKDGSISILGSD
DATTCHIVVLRHTGNGATCLTHCDGSDTKAEVPLIMSSIKSFSEHAECGRLEVHLVGGFSDDRQLSQKLT
HQLLSEFDKQDDDIHLVTLCVTELNDREENENHFPIIYGIAVNIKTAEIYRASFQDRGPEEQLRAARALA
GGPSLSTSPLAEPPHFVEHIRSTLMFLKKFPSPENILFPGNKALLYKKNKDGLWEKISSPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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