NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88877.1 Public Mus musculus 16 Ciita 23 108 98 CCDS HistoryNCBI Gene:12265Re-query CCDS DB by CCDS ID:88877.1Re-query CCDS DB by GeneID:12265See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230450.1 ENSMUSP00000155002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230450.1Link to Ensembl Protein Viewer:ENSMUSP00000155002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230450Re-query CCDS DB by Protein ID:ENSMUSP00000155002
Original member Current member NCBI NM_001302619.1 NP_001289548.1 Accepted alive Link to Nucleotide Sequence:NM_001302619.1Link to Protein Sequence:NP_001289548.1Re-query CCDS DB by Nucleotide ID:NM_001302619Re-query CCDS DB by Protein ID:NP_001289548Link to BLAST:NP_001289548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289548.1 1054 P79621-3 1054 100% 0 0

Chromosomal Locations for CCDS 88877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10501787 10501913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10502136 10502231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10503666 10503728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10503867 10503947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10506196 10506240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10506690 10506824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10508566 10508730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10509357 10509422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10510704 10512354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10513129 10513287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10514437 10514508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10517688 10517768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10518294 10518386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10520968 10521054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10523719 10523802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10523913 10523996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10525167 10525242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3165 nt):
ATGGATCTGGGATCTCCAGAGGGCAGCTACCTGGAACTCCTTAACAGTGATGCCGACCCCCTACATCTCT
ACCACCTCTATGACCAGATGGACCTGGCTGGGGAGGAGGAGATCGAACTCAGCTCAGAGCCAGACACAGA
TACCATCAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGATGAAGAGACCCGGGAGGCC
TATGCCAACATTGCGGAACTGGATCAGTACGTGTTCCAGGATACCCAGCTCGAGGGCCTGAGCAAGGACC
TCTTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGTGAGAACATAGAGATCCCTGTAGAAGCAGGACA
GAAGCCTCAGAAGAGACGCTTCCCGGAAGAGCATGCTATGGACTCAAAGCACAGGAAGCTAGTGCCCACC
TCTAGGACCTCACTGAACTATTTGGATCTCCCCACTGGGCACATCCAGATCTTCACCACTCTGCCCCAGG
GACTCTGGCAAATCTCAGGGGCTGGCACAGGTCTCTCCAGTGTCCTAATCTACCACGGTGAGATGCCCCA
GGTCAACCAAGTGCTCCCTTCAAGCAGCCTCAGTATCCCCAGTCTCCCCGAGTCCCCAGACCGGCCTGGC
TCCACCAGCCCCTTCACACCATCTGCAGCTGACCTGCCCAGCATGCCCGAACCTGCGCTGACCTCCCGTG
TAAATGAGACAGAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCCGAGTCTTCCATCAAGCTTCCAAA
ATGGCCAGAGGCTGTGGAGCGATTCCAGCACTCCCTACAGGACAAATACAAGGCATTGCCCCAGAGCCCA
AGGGGTCCTCTGGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGAAA
GGGAGCTGGCCACTCCCGACTGGACAGAGCGCCAGCTAGCCCACGGTGGTCTGGCAGAGGTACTTCAGGT
TGTCAGTGACTGCAGGCGACCAGGAGAGACACAGGTGGTCGCTGTGCTGGGCAAGGCTGGCCAGGGAAAG
AGCCACTGGGCCAGGACAGTGAGTCACACCTGGGCATGTGGCCAGTTGCTACAATATGACTTTGTCTTCT
ATGTCCCCTGTCATTGCTTGGATCGTCCCGGGGACACCTACCACCTGCGGGATCTGCTCTGTCCCCCGAG
CCTGCAGCCACTGGCCATGGATGACGAGGTCCTTGATTATATCGTGAGGCAGCCAGACCGTGTTCTGCTC
ATCCTAGATGCTTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCACGGACCCTGTGGATCTCTGTCCC
CAGAGCCCTGCTCCCTCCGAGGACTGCTGGCTGGGATCTTCCAGCGGAAGCTACTGCGAGGCTGCACACT
GCTCCTCACAGCCCGGCCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAGGTG
CCCAGCTTCTCTACCAAGCAGGCCAAGACTTACATGAGGCACTACTTTGAGAACTCAGGGACAGCGGGGA
ACCAAGACAAGGCCCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCCCTGTTGT
GTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTACCTTGTACA
CTTACAGGACTCTATGTCAGCCTGCTAGGTCCTGCAGCTCAGAACAGTCCTCCCGGAGCCTTAGTCGAGC
TGGCCAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGAAACCCGGTTTTCATCCGT
GGAGGTGAAAACCTGGGCAGTGACCCAAGGCTTGATGCAGCAGACCCTGGAGACCACGGAGGCTCAACTG
GCCTTCTCCAGTTTTCTGCTACAGTGTTTCCTGGGTGCTGTGTGGCTGGCACAGTGCAATGAAATCAAAG
ACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAAGAAGAGACCCTATGACAACTGGCTGGAGGG
TGTACCACGCTTTCTGGCTGGATTAGTTTTCCAGCCTCGAGCCCACTGCCTGGGAGCTCTGGTGGAGCCT
GCAGTGGCTGCAGTGGCGGATAGGAAACAGAAGGTTCTTACCAGGTACCTGAAGCGCCTGAAGCTGGGGA
CACTCCGGGCAGGGAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGGGA
GCATGTTGCACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGTAT
GTGCTGGGCAGGGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGACCTTCGTCAGACTGGCGTTGAGC
CTTCTGGACTGGGAAACCTCGTGGGACTCAGCTGTGTCACCAGTTTCAGGGCCTCCTTGAGTGATACAAT
GGCATTATGGGAGTCCCTTCAGCAGCAGGGAGAAGCCCAGCTACTCCAGGCGGCAGAGGAGAAGTTCACC
ATTGAGCCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGACCTGGATCGTCTCGTGCAGACCCAGAGGC
TGAGAAACCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCATCCGGGACCTTAAGAAGCTAGAGTTTGC
GTTGGGCCCCATCTTGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCTTCTCTTCTCTG
CAACACCTGGACCTGGACTCACTTAGTGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCTCTCAGCCA
CCTTCCCTCAGCTGAAGGCCCTGGAGACGCTCAACTTGTCCCAAAACAACATCACTGATGTGGGTGCCTG
CAAGCTTGCAGAAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCATC
TGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGATGGATGTCC
AGTTCAACAAGTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCTTCAGAAGTGCCCTCAGGTGGA
AACACTGGCAATGTGGACACCCACTATCCCCTTTGGGGTTCAGGAACACCTGCAGCAGCTGGATGCCAGG
ATCAGTCTGAGATGA

Translation (1054 aa):
MDLGSPEGSYLELLNSDADPLHLYHLYDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQDMELDEETREA
YANIAELDQYVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQKPQKRRFPEEHAMDSKHRKLVPT
SRTSLNYLDLPTGHIQIFTTLPQGLWQISGAGTGLSSVLIYHGEMPQVNQVLPSSSLSIPSLPESPDRPG
STSPFTPSAADLPSMPEPALTSRVNETEDTSPSPCQEGPESSIKLPKWPEAVERFQHSLQDKYKALPQSP
RGPLVAVELVRARLERGSNKSQERELATPDWTERQLAHGGLAEVLQVVSDCRRPGETQVVAVLGKAGQGK
SHWARTVSHTWACGQLLQYDFVFYVPCHCLDRPGDTYHLRDLLCPPSLQPLAMDDEVLDYIVRQPDRVLL
ILDAFEELEAQDGLLHGPCGSLSPEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEV
PSFSTKQAKTYMRHYFENSGTAGNQDKALGLLEGQPLLCSYSHSPVVCRAVCQLSKALLEQGTEAQLPCT
LTGLYVSLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQETRFSSVEVKTWAVTQGLMQQTLETTEAQL
AFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPRAHCLGALVEP
AVAAVADRKQKVLTRYLKRLKLGTLRAGRLLELLHCAHETQQPGIWEHVAHQLPGHLSFLGTRLTPPDVY
VLGRALETASQDFSLDLRQTGVEPSGLGNLVGLSCVTSFRASLSDTMALWESLQQQGEAQLLQAAEEKFT
IEPFKAKSPKDVEDLDRLVQTQRLRNPSEDAAKDLPAIRDLKKLEFALGPILGPQAFPTLAKILPAFSSL
QHLDLDSLSENKIGDKGVSKLSATFPQLKALETLNLSQNNITDVGACKLAEALPALAKSLLRLSLYNNCI
CDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDAR
ISLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH