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Report for CCDS88852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88852.1 Public Mus musculus 15 Tns2 23 108 98 CCDS HistoryNCBI Gene:209039Re-query CCDS DB by CCDS ID:88852.1Re-query CCDS DB by GeneID:209039See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046144.9 ENSMUSP00000041087.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046144.9Link to Ensembl Protein Viewer:ENSMUSP00000041087.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046144Re-query CCDS DB by Protein ID:ENSMUSP00000041087
Original member NCBI NM_001355636.1 NP_001342565.1 Updated not alive Link to Nucleotide Sequence:NM_001355636.1Link to Protein Sequence:NP_001342565.1Re-query CCDS DB by Nucleotide ID:NM_001355636Re-query CCDS DB by Protein ID:NP_001342565
Current member NCBI NM_001355636.2 NP_001342565.1 Accepted alive Link to Nucleotide Sequence:NM_001355636.2Link to Protein Sequence:NP_001342565.1Re-query CCDS DB by Nucleotide ID:NM_001355636Re-query CCDS DB by Protein ID:NP_001342565Link to BLAST:NP_001342565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342565.1 1407 Q8CGB6-3 1407 100% 0 0

Chromosomal Locations for CCDS 88852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102103087 102103161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102104530 102104638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102105339 102105376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102106244 102106282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102106591 102106629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102106789 102106838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102107015 102107186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102107482 102107532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102107802 102107924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102108011 102108075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102108855 102108938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102109321 102109433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102109513 102109573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102109700 102109775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102110471 102110600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102110679 102110744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102110871 102110984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102111082 102112293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102112408 102112576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102112667 102113232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102113336 102113425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102113710 102113835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114041 102114133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114261 102114338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114471 102114548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114990 102115158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102115561 102115629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102115737 102115766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102115858 102115996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4224 nt):
ATGAAGTCCAGCGGCCCTGTGGAAAGGTTGCTCAGAGCCCTGGGGAGGAGGGACAGCAGCCGGGCCACCA
GCAGGCCGAGGAAAGCAGAACCACACAGCTTCCGGGAGAAGGTTTTCCGGAAGAAAACTCCAGTGTGTGC
AGTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAGAAAA
TGTGAAGCAAAGGTGACTTCATCCTGTCAGGCCTTGCCCCCTGCGGAGCTGCGGAGAAGCACAGCCCCGG
TCCGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAG
GAGCTTCAGCCTAGATCCGCTCATGGAGCGTCGCTGGGACTTGGACCTCACCTATGTAACGGAGCGGATC
TTGGCCGCAGCTTTTCCTGCACGACCGGACGAGCAGCGACACCGAGGCCACTTGCGCGAGCTAGCCCATG
TGCTTCAATCCAAGCACAGAGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACGGCATGACCTCACCCG
CCTGAACCCCAAGGTGCAAGACTTTGGTTGGCCTGAACTACATGCCCCACCTCTGGACAAGTTGTGTTCC
ATCTGCAAAGCCATGGAGACGTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTTGTACTGCAAGGGGA
GCAAAGGCAAGCTTGGGGTCATCGTCTCTGCTTATATGCACTACAGCAAGATCTCTGCAGGGGCAGACCA
GGCGCTGGCAACCCTCACCATGAGGAAATTCTGTGAGGACAAGGTGGCCACGGAACTGCAGCCCTCCCAG
CGCCGCTATGTCAGCTACTTCAGCGGACTGCTGTCTGGCTCCATCAGAATGAACAGCAGCCCACTCTTCC
TGCACTATGTGTTTGTTCCTGTGCTGCCAGCCTTTGAGCCCAACACAGGCTTCCAGCCCTTCCTCAAGAT
CTACCAGTCTATGCAGCTGGTCTACACATCTGGAGTCTACCGCATAGCAGGTCCAGGGCCTCAGCAACTT
TGTATCAGCCTGGAGCCAGCCCTTCTCCTCAAAGGCGACGTCATGGTAACCTGCTACCACAAGGGTGGCC
AGGGGACAGACCGGACCCTCGTGTTCCGAGTTCAGTTCCACACATGCACCATTCATGGATCACGGCTCAC
CTTCCCAAAGGACCAACTAGATGAGGCCTGGGCTGATGAGCGGTTTCCTTTCCAAGCCTCAGTGGAGTTT
GTTTTCTCCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCACGGAATGATCCCTCTGTCTCCGTGGATT
ACAACACGACAGAGCCTGCTGTACGCTGGGACTCCTATGAAAACTTCAATCAGCACCATGAGGATAGCGT
GGACGGCGCCTTGGCCCACACAAGGGGCCCCCTGGATGGCAGTCCTTATGCCCAGGTGCAGCGGGTCCCC
CGCCAGACACCACCAGCACCTTCTCCAGAGCTTCCCCCACCCCCGATGCTCTCTGTCAGCAGCGACTCTG
GCCACTCATCCACGCTAACCACAGAACACACAGCAGAATCCCCCGGCCGGCCGCCCCCAACTGCTGCTGA
AAGACAGGAGCTGGATCGTCTGCTGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTGCTGGGCGAGAG
ACCGCCATCCTTGATGATGAAGAGCAGCCCTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTCAGGCC
ACAGGCCTGGACTCAGTCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGCCTTGTGGGGTCCCTAATGG
GAGCTACTACCGGCCTGAGGGAACCCTAGAGAGACGACGACCACCCTATGGGGGCTATGAGGGACACCCC
CAGGGCTACGCAGAAGCCTCTGTGGAGAAGAGACGCCTCTGCAGGTCACTGTCAGAAGGGCCGTACCCCT
ATGCACCCGAGCTGGGGAAACCAGCCAATGGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTGGT
GATCCTGGAGGACCCTGGGGTGCCTGCTTTATGCTCATGCCCTGCCTGTGAAGAGAAGCTGGCACTGCCC
ACCGCAGCCCTGTATGGACTGCGACTAGAGAGGGAGGCTGCAGAGGGGTGGTCCAGCGAGGTAGGCAAGC
CTCTCCTGCACCCAGTGAGGCCTGGACACCCATTGCCTCTGCTGGTGCCTGCCTGTGGGCATCATCATGC
CCCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAGGAAGGGCATGAGGGCTGCTCCTAT
GCCGTGTGCTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGCCCTGGTAACCTATGGCTATGGAGGAG
CGGTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGG
GTACCCCAGCCCTGGTGCCCACTCACCACGGGCTGGATCTGTGTCCCCGGGGAGTCCACCCTACCTGCAG
CCCAGGAAGCTGGGTTATGAGATTTCTGCGGAGGATGGGAGAGACAAGTACCCACTTTCTGGACACCTGG
CCTCAACAGGACCCTTGGCTTCTACAGAGCTCTTCCCTCCCGTCTCAGAGTCACCTGAACCATCCTGGAG
GGATGGCTCCAGTGGACACAGCACGCTACCTCGGTCTCCCCGAGATCCTCAGTGCAGTGCTTCTTCAGAG
CTGTCTGGTCCCTCCACACCCTTACACACCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAG
ACACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGGCCTTGCCCTCTGTTGT
ACAGGGAGTTGCTGAAAAGACTCCTGAGCTGTTGACAAGCAGCAGGCCTGAGCAACTGGACCCTAGCCCC
TTCTCCCAGACCTCTGCACCCGGCTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGGAGGCCACACCA
ACAGTGCTAGTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGACTTCGCCATGCCCCGTGGCAGGGCCC
TCGGGGCACTTCAGATAGCCCAGATGGCTCCCCTCTTACTCCTGTGCCTACCCAGATGCCCTGGCTTGTG
GGCAGCCCAGAACCACCCCAGAGCTCACCCACCCCTGCCTTCCCCCTGGCTACCTCCTATGATGCCAATG
GTCCCATTCAGCCTCCACTTCCTGAAAAACGACACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACCAGC
CAGAAGCACCAATCAACATGTCACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCCCCAGAACACCCT
TTACAAGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATACATCAAAGTTCTGGTACAAGCCACATCTTT
CCCGAGACCAAGCCATTGCCCTGCTGAAAGACAAGGATCCTGGGGCCTTCCTGATTAGAGACAGCCATTC
ATTCCAAGGAGCCTATGGGCTAGCCCTCAAGGTGGCTACACCTCCACCCAGTGCGCAGCCCTGGAAAGGG
GACCCCTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCAAAGGCGTGAAGATCAAGGGTT
GTCCCACTGAGCCCTATTTTGGAAGCCTGTCTGCCCTGGTCTCCCAGCACTCCATCTCTCCCATCTCCCT
GCCCTGCTGTCTGAGAATTCCTAGCAAAGATCCTCTAGAAGAAACCCCAGAGGCCCCAGTGCCTACCAAC
ATGAGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTGCTCTACCTGACCTCGGTGGAGA
CAGAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCTGCAGCTCTGAGCTGCAGCCCGGTCCC
AGTGCCAGCCATTGTCCATTTCAAGGTCTCAGCTCAAGGCATCACACTGACAGACAACCAGAGAAAGCTC
TTCTTTCGCCGCCATTACCCAGTGAACAGCATCACCTTCTCTAGCACTGACCCCCAGGACCGCAGATGGA
CCAACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTCCCTGGGAAAA
TGTGTGTCACCTCTTTGCGGAGCTTGACCCGGACCAACCGGCAAGTGCCATTGTCACCTTCATCACCAAA
GTTCTACTGGGCCAGAGGAAATGA

Translation (1407 aa):
MKSSGPVERLLRALGRRDSSRATSRPRKAEPHSFREKVFRKKTPVCAVCKVTIDGTGVSCRVCKVATHRK
CEAKVTSSCQALPPAELRRSTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERI
LAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCS
ICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQ
RRYVSYFSGLLSGSIRMNSSPLFLHYVFVPVLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQQL
CISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTIHGSRLTFPKDQLDEAWADERFPFQASVEF
VFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGALAHTRGPLDGSPYAQVQRVP
RQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEHTAESPGRPPPTAAERQELDRLLGGCGVASAGRGAGRE
TAILDDEEQPSVGGGLHLGMYSGHRPGLSRRCSCRQGFREPCGVPNGSYYRPEGTLERRRPPYGGYEGHP
QGYAEASVEKRRLCRSLSEGPYPYAPELGKPANGDFGYRPAGYREVVILEDPGVPALCSCPACEEKLALP
TAALYGLRLEREAAEGWSSEVGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYGCLKPPKVGEEGHEGCSY
AVCSEGRYGHSGYPALVTYGYGGAVPSYCPAYGRAPHSCGSPSEGRGYPSPGAHSPRAGSVSPGSPPYLQ
PRKLGYEISAEDGRDKYPLSGHLASTGPLASTELFPPVSESPEPSWRDGSSGHSTLPRSPRDPQCSASSE
LSGPSTPLHTSSPVQGKESNRRQDTTRSPSLAPTQRLSPGEALPSVVQGVAEKTPELLTSSRPEQLDPSP
FSQTSAPGSPNGWPQERSPGGHTNSASPRSPVPTTLPGLRHAPWQGPRGTSDSPDGSPLTPVPTQMPWLV
GSPEPPQSSPTPAFPLATSYDANGPIQPPLPEKRHLPGSGQQPSPPARSTNQHVTFASPLPDVTQPPEHP
LQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKG
DPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTN
MSTAADLLRQGAACSVLYLTSVETESLTGPQAVAKASSAALSCSPVPVPAIVHFKVSAQGITLTDNQRKL
FFRRHYPVNSITFSSTDPQDRRWTNPDGATSKIFGFVAKKPGSPWENVCHLFAELDPDQPASAIVTFITK
VLLGQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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