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Report for CCDS88834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88834.1 Public Mus musculus 15 Cacnb3 23 108 98 CCDS HistoryNCBI Gene:12297Re-query CCDS DB by CCDS ID:88834.1Re-query CCDS DB by GeneID:12297See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003442.8 ENSMUSP00000003442.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003442.8Link to Ensembl Protein Viewer:ENSMUSP00000003442.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003442Re-query CCDS DB by Protein ID:ENSMUSP00000003442
Original member NCBI NM_001286226.1 NP_001273155.1 Updated not alive Link to Nucleotide Sequence:NM_001286226.1Link to Protein Sequence:NP_001273155.1Re-query CCDS DB by Nucleotide ID:NM_001286226Re-query CCDS DB by Protein ID:NP_001273155
Current member NCBI NM_001286226.2 NP_001273155.1 Accepted alive Link to Nucleotide Sequence:NM_001286226.2Link to Protein Sequence:NP_001273155.1Re-query CCDS DB by Nucleotide ID:NM_001286226Re-query CCDS DB by Protein ID:NP_001273155Link to BLAST:NP_001273155.1

Chromosomal Locations for CCDS 88834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98635169 98635213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98639488 98639610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98639814 98639936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98640339 98640454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98640686 98640750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98640959 98640978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641400 98641458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641616 98641725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98641939 98642090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98642309 98642404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98642502 98642651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98643257 98643571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCGGGTTCAGCCGACTCCTACACCAGCC
GCCCCTCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGAGAAGTGGAGAGTCA
GGCTCAGCAGCAGCTGGAAAGAGCCAAGCACAAACCTGTGGCATTTGCTGTGAGGACCAATGTCAGCTAC
TGTGGGGTTCTGGATGAGGAGTGCCCGGTCCAGGGCTCTGGAGTCAACTTTGAGGCCAAAGATTTTCTGC
ACATTAAAGAGAAGTACAGCAATGACTGGTGGATCGGGAGGCTAGTGAAAGAGGGCGGAGACATCGCCTT
CATCCCCAGCCCCCAACGCCTGGAGAGCATCCGGCTCAAACAGGAACAGAAGGCCAGGAGATCTGGGAAC
CCTTCCAGCCTGGGTGACATTGGCAACCGACGCTCTCCTCCTCCGTCTCTAGCCAAGCAGAAGCAAAAGC
AGGTCACGGACATGATGCAGAAGGCGCTCTTCGACTTCCTTAAACACAGGTTTGATGGCAGGATCTCCAT
CACACGCGTCACGGCCGACCTCTCGCTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATC
ATTGAGCGCTCCTCCGCCCGCTCCAGCATTGCTGAAGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGG
CCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAACTTGCCAAGACCTC
ACTGGCTCCCATCATCGTCTTTGTCAAAGTGTCCTCGCCAAAGGTACTGCAGCGACTGATCCGCTCCAGG
GGAAAGTCACAGATGAAGCACCTCACTGTACAGATGATGGCGTACGATAAGCTGGTTCAGTGCCCACCCG
AGTCATTCGACGTGATTCTGGATGAGAACCAGCTAGAAGATGCCTGTGAGCACCTGGCTGAATACTTAGA
GGTTTACTGGCGAGCGACCCACCACCCAGCACCGGGCCCCGGACTGCTGGGTCCGCCTAGTGCCATCCCT
GGACTTCAGAACCAGCAGCTGCTGGGGGAGCGAGTGGAGGAGCACTCACCCCTGGAGAGGGACAGCCTGA
TGCCCTCAGATGAGGCCAGCGAGAGCTCCCGCCAGGCCTGGACCGGATCTTCACAGCGCAGCTCTCGCCA
TCTGGAGGAGGACTATGCAGATGCCTACCAGGACCTGTACCAGCCTCACCGCCAACACACCTCGGGGCTG
CCCAGTGCTAACGGGCACGACCCCCAAGACCGGCTCCTAGCCCAGGACTCGGAGCATGACCACAATGACC
GGAACTGGCAGCGTAACCGGCCTTGGCCCAAGGACAGCTACTGA

Translation (457 aa):
MYDDSYVPGFEDSEAGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSY
CGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKARRSGN
PSSLGDIGNRRSPPPSLAKQKQKQVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTI
IERSSARSSIAEVQSEIERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSR
GKSQMKHLTVQMMAYDKLVQCPPESFDVILDENQLEDACEHLAEYLEVYWRATHHPAPGPGLLGPPSAIP
GLQNQQLLGERVEEHSPLERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQHTSGL
PSANGHDPQDRLLAQDSEHDHNDRNWQRNRPWPKDSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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