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Report for CCDS88702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88702.1 Public Mus musculus 14 Sorbs3 23 108 98 CCDS HistoryNCBI Gene:20410Re-query CCDS DB by CCDS ID:88702.1Re-query CCDS DB by GeneID:20410See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227259.1 ENSMUSP00000153715.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227259.1Link to Ensembl Protein Viewer:ENSMUSP00000153715.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227259Re-query CCDS DB by Protein ID:ENSMUSP00000153715
Original member Current member EBI ENSMUST00000227653.1 ENSMUSP00000154195.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227653.1Link to Ensembl Protein Viewer:ENSMUSP00000154195.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227653Re-query CCDS DB by Protein ID:ENSMUSP00000154195
Original member NCBI NM_001271407.1 NP_001258336.1 Updated not alive Link to Nucleotide Sequence:NM_001271407.1Link to Protein Sequence:NP_001258336.1Re-query CCDS DB by Nucleotide ID:NM_001271407Re-query CCDS DB by Protein ID:NP_001258336
Current member NCBI NM_001271407.2 NP_001258336.1 Accepted alive Link to Nucleotide Sequence:NM_001271407.2Link to Protein Sequence:NP_001258336.1Re-query CCDS DB by Nucleotide ID:NM_001271407Re-query CCDS DB by Protein ID:NP_001258336Link to BLAST:NP_001258336.1
Original member Current member NCBI NM_001271408.1 NP_001258337.1 Accepted alive Link to Nucleotide Sequence:NM_001271408.1Link to Protein Sequence:NP_001258337.1Re-query CCDS DB by Nucleotide ID:NM_001271408Re-query CCDS DB by Protein ID:NP_001258337Link to BLAST:NP_001258337.1

Chromosomal Locations for CCDS 88702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70181170 70181231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70183666 70183772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70184007 70184107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70184828 70185136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70186859 70186984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70190728 70190842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70191016 70191062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70191148 70191200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70191433 70191575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70192086 70192147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70192607 70192693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70193406 70193459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70193561 70193647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70193861 70193951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70195413 70195506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70195923 70195961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70199282 70199345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70201349 70201542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70202931 70203048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70203272 70203361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGCAAGGCCTCCCTGCTGGGCTCAGCCTGGATGATTTCATCCCTGGTCACCTCCGAACCCATATAGGCT
CATCCTCCCGGGGGACAAGGGTGCCAGTGATCCGGAATGGTGGCTCCAACACCCTTAATTTCCAGTTTCA
TGACCCTGCGCCCAGGACTGTGTGCAATGGCTGCCCCCCACCCAGGAGAGATGGTTCCTTGAATCCAGAC
CCAGCATGGTATCAGACCTGGCCAGGCCCTGGGAGCCGGCCCTCTATGAGCCCGAAGCCACCTGCTTCCC
AGCATGCCCAGAACTGGTCAGCCACATGGACCAAGGACAGCAAGCGACAGGACAAGCGCTGGGTGAAGTA
CGAGGGAATCGGGCCCGTGGATGAGAGCGGCATGCCCATTGCCCCCCGATCTAGTGTTGACAGCCCCAGA
GACTGGTATCGAAGAATGTTCCAGCAAATTCACCGGAAAATGCCAGACCTGCAGCTGGACTGGACCTTGG
AAGACCCACCCAAAGTGGTTTCCGCACGCGCCTCTTCTGCAGAACCCAGGCATCTAGGGACCCTGCAAAG
ACCTGCCTCCAGGCCTGGCACAACTGAGACTTCTAGCGGAAGAAACTGGAACCACTCTGAAGAGACATCT
AGAAACACCTTTAACTATAATTTTAGACCATCCTCTTCAGGGCTTCATCCCCCAAATCAGGTGCCTAGAC
ATCGAGAGAAAGTAGAGAATGTCTGGACAGAAGATTCCTGGAACCAGTTTCTGCACGAACTAGAAACTGG
GCATAAGCCTAAGAAACCACTGGTGGATGACCCTGTTGAGAAGCCTGCACAGCCCATTGAGGTCCTGCTA
GAGAGAGAACTGGCCAAGCTGAGCGCAGAGCTGGACAAGGACCTGCGGGCCATTGAGACCCGCCTGCCGT
CCCCCAAGAACTCTCAGGCTCCACGACGGCCCCTTGAGCAGCCCGGCTTGGAGCAGCAGCCCTCAGCCCG
TCTGTCCTCAGCCTGGAGGCCCAACTCACCGCATGCACCTTACTTCAGTTCCTCCCGACCCCTGAGCCCC
CACAGAATGGCAGATGGAGGAGGAAGCCCCTTTCTGGGACGTAGAGATTTTGTCTACCCTTCCTCAGCCC
GAGAGCCTAGCGCCTCTGAAAGGGGTAGCAGCCCTTCGAGGAAAGAAGAGAAGAAGAGGAAGGCCGCCCG
GCTCAAGTTTGACTTCCAGGCACAGTCCCCCAAGGAGCTGTCTCTGCAGAAGGGTGACATTGTCTATATC
CATAAGGAAGTGGACAAGAACTGGCTGGAGGGGGAACACCATGGCCGGCTGGGCATCTTCCCAGCTAATT
ATGTGGAGGTTCTGCCTGCCGATGAGATTCCCAAGCCCATCAAGCCGCCCACATACCAGGTGCTGGAGTA
TGGCGATGCAGTAGCCCAGTATACCTTCAAGGGAGACCTGGAGGTAGAACTGTCCTTCCGAAAGGGAGAA
CGCATCTGCCTGATCCGCAAGGTGAACGAACATTGGTATGAGGGGCGCATCACTGGCACTGGACGCCAGG
GCATCTTCCCTGCCAGCTACGTGCAGATAAACCGAGAGCCCCGGCTCAGGCTTTGTGATGATGGTCCCCA
GCTCCCTGCATCACCTAACCCGACAACCACTGCTCACCTAAGCAGCCACTCCCACCCCTCCTCAATACCT
GTGGACCCCACTGACTGGGGAGGTCGAACCTCCCCTCGACGCTCCGCCTTTCCCTTCCCCATCACCCTCC
AGGAGCCCAGATCCCAAACCCAGAGTCTCAATACCCCTGGACCAACCCTGTCCCATCCTCGAGCCACCAG
CCGTCCCATAAACCTGGGACCCTCCTCCCCAAACACAGAGATACACTGGACTCCGTACCGGGCCATGTAC
CAGTACAGGCCCCAGAATGAGGACGAGCTGGAACTTCGAGAGGGGGACCGTGTGGATGTCATGCAGCAAT
GTGACGATGGCTGGTTTGTGGGTGTCTCCCGGCGAACTCAGAAATTTGGGACATTCCCTGGAAATTATGT
AGCCCCAGTGTGA

Translation (680 aa):
MQGLPAGLSLDDFIPGHLRTHIGSSSRGTRVPVIRNGGSNTLNFQFHDPAPRTVCNGCPPPRRDGSLNPD
PAWYQTWPGPGSRPSMSPKPPASQHAQNWSATWTKDSKRQDKRWVKYEGIGPVDESGMPIAPRSSVDSPR
DWYRRMFQQIHRKMPDLQLDWTLEDPPKVVSARASSAEPRHLGTLQRPASRPGTTETSSGRNWNHSEETS
RNTFNYNFRPSSSGLHPPNQVPRHREKVENVWTEDSWNQFLHELETGHKPKKPLVDDPVEKPAQPIEVLL
ERELAKLSAELDKDLRAIETRLPSPKNSQAPRRPLEQPGLEQQPSARLSSAWRPNSPHAPYFSSSRPLSP
HRMADGGGSPFLGRRDFVYPSSAREPSASERGSSPSRKEEKKRKAARLKFDFQAQSPKELSLQKGDIVYI
HKEVDKNWLEGEHHGRLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGDAVAQYTFKGDLEVELSFRKGE
RICLIRKVNEHWYEGRITGTGRQGIFPASYVQINREPRLRLCDDGPQLPASPNPTTTAHLSSHSHPSSIP
VDPTDWGGRTSPRRSAFPFPITLQEPRSQTQSLNTPGPTLSHPRATSRPINLGPSSPNTEIHWTPYRAMY
QYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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