NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88663.1 Public Mus musculus 14 Sall2 23 108 98 CCDS HistoryNCBI Gene:50524Re-query CCDS DB by CCDS ID:88663.1Re-query CCDS DB by GeneID:50524See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135523.4 ENSMUSP00000154331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135523.4Link to Ensembl Protein Viewer:ENSMUSP00000154331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135523Re-query CCDS DB by Protein ID:ENSMUSP00000154331
Original member Current member NCBI NM_001244916.1 NP_001231845.1 Accepted alive Link to Nucleotide Sequence:NM_001244916.1Link to Protein Sequence:NP_001231845.1Re-query CCDS DB by Nucleotide ID:NM_001244916Re-query CCDS DB by Protein ID:NP_001231845Link to BLAST:NP_001231845.1

Chromosomal Locations for CCDS 88663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52312722 52315663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52316043 52316109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3009 nt):
ATGGCGCAGGAAACCGGGAGCAGCTCTCGACTCGGGGGACCCTGCGGGGAGTCTGCGGAGCGCGGAGGTG
ATGCTAGCGAGGAAGACCACCCCCAAGTCTGTGCCAAATGCTGCGCACAATTCTCTGACCCGACCGAATT
CCTCGCTCACCAGAACTCATGTTGCACTGACCCACCGGTAATGGTGATAATTGGAGGCCAGGAGAATCCC
AGCAACTCTTCAGCCTCCTCTGCGCCCCGACCAGAGGGCCACAGTAGGTCCCAGGTCATGGATACAGAGC
ACAGCAATCCCCCAGATTCTGGGTCCTCTGGGGCCCCGGATCCCACTTGGGGGCCAGAGCGGAGGGGAGA
GGAATCTTCTGGGCAATTCCTGGTCGCTGCCACAGGTACAGCGGCTGGGGGAGGTGGGGGCCTTATCTTG
GCCAGTCCCAAGCTGGGAGCAACCCCATTACCTCCAGAATCCACTCCTGCACCCCCTCCTCCCCCACCTC
CCCCTCCCCCTCCAGGTGTAGGCAGTGGCCACTTGAACATTCCTCTGATCTTGGAAGAGTTGCGGGTGCT
GCAGCAGCGCCAGATTCACCAGATGCAGATGACTGAACAAATCTGCCGCCAGGTGCTGCTACTTGGCTCC
TTGGGGCAGACCGTGGGTGCCCCTGCCAGTCCCTCAGAGCTACCTGGGACAGGGGCTGCCTCTTCCACCA
AGCCCCTACTGCCTCTCTTCAGTCCCATCAAGCCAGCGCAAACTGGCAAGACACTGGCATCTTCCTCTTC
GTCATCCTCCTCCTCTGGAGCTGAACCGCCTAAGCAGGCTTTCTTCCACCTTTACCATCCACTGGGATCA
CAGCATCCCTTCTCTGTAGGAGGGGTTGGGCGGAGCCACAAACCCACCCCTGCCCCTTCCCCTGCGCTGC
CAGGCAGTACGGATCAGCTGATTGCTTCACCTCATCTGGCATTCCCAGGCACCACCGGACTCCTGGCAGC
TCAGTGTCTTGGGGCAGCAAGGGGCCTTGAGGCTGCTGCCTCCCCAGGGCTCCTGAAGCCAAAGAACGGA
AGTGGTGAACTGGGCTATGGGGAAGTGATCAGTTCCTTGGAGAAACCCGGTGGAAGGCACAAATGCCGCT
TTTGTGCAAAAGTATTCGGCAGTGACAGCGCCCTGCAGATCCACCTTCGTTCCCACACTGGTGAGAGGCC
CTATAAGTGCAACGTCTGTGGTAACCGTTTCACAACTCGGGGCAACCTCAAAGTACATTTTCACCGGCAT
CGTGAGAAGTACCCACATGTGCAAATGAATCCACATCCAGTACCGGAGCACCTAGACTACGTCATCACCA
GCAGTGGGCTGCCTTACGGAATGTCTGTGCCACCAGAGAAAGCAGAAGAGGAGGCAGGCACACCAGGCGG
AGGTGTTGAACGCAAACCCCTAGTGGCCTCCACCACAGCACTCAGTGCCACAGAGAGCCTGACACTGCTC
TCCACTGGCACAAGCACAGCAGTGGCTCCTGGGCTCCCTACTTTCAACAAGTTTGTGCTCATGAAGGCAG
TGGAACCCAAGAGTAAAGCGGATGAGAACACGCCCCCAGGGAGTGAGGGCTCCGCCATCGCTGGAGTAGC
AGACAGTGGCTCAGCAACCCGAATGCAGCTAAGTAAGCTGGTGACGTCACTACCGAGTTGGGCACTGCTT
ACTAATCACTTGAAGTCAACTGGAAGTTTCCCCTTCCCTTATGTGCTAGAACCCTTGGGGGCTTCGCCTT
CTGAGACCTCAAAGCTGCAGCAGCTAGTAGAAAAGATTGACCGCCAAGGAGCTGTGGCGGTGGCATCTAC
TGCCTCGGGAGCTCCCACCACTTCTGCCCCTGCACCTTCCTCCTCCGCTTCTGGACCTAACCAGTGTGTG
ATCTGTCTTCGGGTCCTGAGCTGCCCTCGGGCTCTACGCCTGCATTATGGCCAACATGGAGGTGAGCGGC
CCTTCAAGTGTAAAGTGTGTGGCCGAGCTTTCTCCACAAGGGGCAATTTGCGCGCACATTTCGTGGGTCA
CAAGACCAGTCCAGCTGCCCGGGCTCAGAACTCCTGCCCCATTTGTCAGAAGAAGTTCACTAATGCTGTC
ACTCTGCAGCAACATGTTCGGATGCACCTGGGGGGCCAGATCCCCAATGGGGGTTCCGCACTTTCTGAAG
GTGGGGGAGCTGCCCAGGAAAACAGCTCTGAGCAGTCTACAGCCTCTGGACCAGGGAGTTTCCCCCAGCC
GCAGTCCCAGCAGCCATCTCCAGAAGAGGAGATGTCTGAGGAAGAGGAAGAGGATGAGGAAGAGGAGGAA
GACGTGACAGATGAAGATTCCCTAGCAGGAAGAGGCTCTGAGAGTGGGGGAGAGAAGGCCATATCAGTAC
GAGGTGACTCAGAAGAGGTATCTGGGGCAGAGGAAGAAGTGGCAACATCAGTAGCAGCACCCACCACTGT
GAAGGAGATGGACAGTAATGAGAAAGCCCCTCAACACACTCTGCCGCCACCTCCGCCACCACCCGACAAC
CTGGATCATCCCCAACCCATGGAGCAGGGAACCAGTGATGTTTCCGGAGCCATGGAGGAAGAAGCCAAAC
TGGAGGGAACCTCAAGCCCGATGGCAGCCCTCACCCAAGAAGGGGAGGGCACCAGCACCCCTTTGGTGGA
AGAGCTGAACTTACCGGAAGCCATGAAGAAGGATCCAGGAGAGAGCAGCGGCAGGAAGGCCTGTGAAGTA
TGTGGCCAGAGCTTTCCTACCCAGACAGCTCTGGAGGAGCATCAGAAGACCCATCCCAAGGATGGGCCAC
TCTTCACTTGTGTCTTCTGCAGGCAGGGCTTCCTTGACCGTGCTACCCTCAAGAAGCACATGCTGTTGGC
TCACCACCAGGTACCGCCCTTTGCACCCCATGGCCCTCAGAATATTGCTACTCTTTCCTTGGTCCCTGGC
TGTTCCTCCTCCATCCCTTCTCCAGGGCTCTCCCCATTCCCTCGAAAAGATGACCCCACCATGCCATGA

Translation (1002 aa):
MAQETGSSSRLGGPCGESAERGGDASEEDHPQVCAKCCAQFSDPTEFLAHQNSCCTDPPVMVIIGGQENP
SNSSASSAPRPEGHSRSQVMDTEHSNPPDSGSSGAPDPTWGPERRGEESSGQFLVAATGTAAGGGGGLIL
ASPKLGATPLPPESTPAPPPPPPPPPPPGVGSGHLNIPLILEELRVLQQRQIHQMQMTEQICRQVLLLGS
LGQTVGAPASPSELPGTGAASSTKPLLPLFSPIKPAQTGKTLASSSSSSSSSGAEPPKQAFFHLYHPLGS
QHPFSVGGVGRSHKPTPAPSPALPGSTDQLIASPHLAFPGTTGLLAAQCLGAARGLEAAASPGLLKPKNG
SGELGYGEVISSLEKPGGRHKCRFCAKVFGSDSALQIHLRSHTGERPYKCNVCGNRFTTRGNLKVHFHRH
REKYPHVQMNPHPVPEHLDYVITSSGLPYGMSVPPEKAEEEAGTPGGGVERKPLVASTTALSATESLTLL
STGTSTAVAPGLPTFNKFVLMKAVEPKSKADENTPPGSEGSAIAGVADSGSATRMQLSKLVTSLPSWALL
TNHLKSTGSFPFPYVLEPLGASPSETSKLQQLVEKIDRQGAVAVASTASGAPTTSAPAPSSSASGPNQCV
ICLRVLSCPRALRLHYGQHGGERPFKCKVCGRAFSTRGNLRAHFVGHKTSPAARAQNSCPICQKKFTNAV
TLQQHVRMHLGGQIPNGGSALSEGGGAAQENSSEQSTASGPGSFPQPQSQQPSPEEEMSEEEEEDEEEEE
DVTDEDSLAGRGSESGGEKAISVRGDSEEVSGAEEEVATSVAAPTTVKEMDSNEKAPQHTLPPPPPPPDN
LDHPQPMEQGTSDVSGAMEEEAKLEGTSSPMAALTQEGEGTSTPLVEELNLPEAMKKDPGESSGRKACEV
CGQSFPTQTALEEHQKTHPKDGPLFTCVFCRQGFLDRATLKKHMLLAHHQVPPFAPHGPQNIATLSLVPG
CSSSIPSPGLSPFPRKDDPTMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH