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Report for CCDS88612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88612.1 Public Mus musculus 14 Nek4 23 108 98 CCDS HistoryNCBI Gene:23955Re-query CCDS DB by CCDS ID:88612.1Re-query CCDS DB by GeneID:23955See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226551.1 ENSMUSP00000154678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226551.1Link to Ensembl Protein Viewer:ENSMUSP00000154678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226551Re-query CCDS DB by Protein ID:ENSMUSP00000154678
Original member Current member NCBI NM_001308328.1 NP_001295257.1 Accepted alive Link to Nucleotide Sequence:NM_001308328.1Link to Protein Sequence:NP_001295257.1Re-query CCDS DB by Nucleotide ID:NM_001308328Re-query CCDS DB by Protein ID:NP_001295257Link to BLAST:NP_001295257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295257.1 744 Q9Z1J2-2 744 100% 0 0

Chromosomal Locations for CCDS 88612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30951626 30951718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30953803 30954069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30956881 30957078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30957262 30957369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30959141 30959295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30963933 30964074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30970163 30970564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30975223 30975372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30975761 30975827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30977446 30977579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30979990 30980078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30982314 30982516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30984344 30984477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30987112 30987204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGCCCCAGGCCGCATACTGCTACATGCGGGTCGTGGGCAGGGGTAGTTACGGGGAGGTGACGCTCGTGA
AGCATCGGCGAGACGGCAAGCAGTATGTCATCAAAAAGCTGAACCTCCGAAATGCCTCCAGCCGAGAGCG
TCGAGCTGCTGAGCAGGAAGCTCAGCTCCTATCTCAGTTGAAGCACCCCAACATTGTCACCTACAAAGAA
TCATGGGAGGGAGGAGACGGTCTGCTCTACATTGTCATGGGCTTCTGCGAAGGAGGTGATCTGTACCGGA
AGCTCAAGGAGCAGAAAGGGCAGCTTCTGCCTGAGAGTCAGGTGGTGGAGTGGTTTGTCCAGATCGCCAT
GGCCTTGCAGTATTTACATGAGAAACACATCCTTCATCGAGATCTGAAAACTCAGAATGTCTTCTTAACA
AGAACAAACATCATCAAAGTGGGGGACCTAGGAATTGCCCGCGTCTTAGAGAATCACGGTGACATGGCGA
GCACCCTCATTGGCACACCCTATTACATGAGCCCTGAGCTGTTCTCCAACAAACCCTACAACTATAAGTC
GGATGTTTGGGCTTTGGGATGCTGTGTATATGAAATGGCCACCCTGAAGCACGCTTTTAATGCAAAAGAC
ATGAATTCTTTAGTTTATCGGATTATTGAAGGAAAGTTGCCGCCAATGCCAAAAGTTTACAGCACAGAGC
TGGCTGAGCTGATAAGAACAATGCTGAGCAGAAGGCCTGAGGAGAGGCCCTCTGTGCGGAGCATCCTGAG
GCAGCCCTACATAAAACACCACATCTCCTTGTTCTTGGAGGCCACCAAGGCAAAAACTTCCAAAAATAAT
GTTAAAAACTGTGACTCCAGAGCCAAGCCTGTTGCTGCTGTAGTTTCCAGAAAGGAAGAATCAAATACTG
ACGTGATACACTACCAGCCACGCTCTTCTGAGGGCTCTGCTTTGCATGTCATGGGTGAAGATAAATGTTT
GTCCCAAGAGAAACCAGTGGACATTGGTCCCTTGAGATCACCGGCTAGTCTTGAAGGCCACACTGGCAAA
CAAGACATGAACAATACTGGGGAGTCATGTGCCACAATCAGTAGGATAAATATCGATATCTTACCTGCAG
AAAGGAGGGACTCAGCGAACGCTGGTGTAGTTCAGGAGAGCCAACCACAACACGTGGATGCCGCTGATGA
AGTAGACAGTCAGTGCAGTATTTCTCAAGAGAAGGAGAGGCTACAGGGCAATACCAAGTCCAGTGATCAG
CCTGGAAATCTCCTTCCCAGACGGTCCTCTGATGGTGGTGATGGGGAAGGGAGTGAACTGGTGAAGCCAT
TGTATCCCTCAAATAAAGACCAAAAGCCAGACCAGTTCCAAGAATTACCCCCTCGGCTTTTGCCTTCTTA
TCCTGGTATTGGGAAAGTGGATATCATAGCAACACAGCAAAATGATGGAAACCAAGGTGGACCTGTGGCT
GGGTGTGTAAACAGTTCAAGGACCAGCTCAACAGCATCAGCAAAGGATCGACCATTATCAGCCAGAGAGA
GGAGACGGCTAAAGCAGTCACAGGAGGAGATGCTGCCCTCAGGCCCTGCAGTTCAGAGAACTCCAAGTGC
AGTTGAGCCACTGAAACCACAGGAAGAAGACCAACCCATCCCTGCCCAACGATTCTCTTCTGACTGCAGC
ATCACTCAGATGAATCACACACTCCCGAGGGAAAAGGAGAAGAGGCTGATGCATGGCCTGTCTGAGGATG
AGTTAAGCTCTTCTACAAGCTCAACTGATAAGTCAGATGGGGATTCCAGGGAGGGGAAGAGTCATACAAA
TGAAATGAAAGACTTGGTACAGCTGATGACTCAGACTCTGAGGCTGGAAGCTAAGGAGAGCTGTGAAGAT
CTCCAGGTCCTAAACCCAGGGTCAGAATTCAGACTTCATCGAAAGTATCGAGACACGCTGGTGCTTCATG
GCAAGGTTGCAGAAGAGGTGGAACCCCACTGTACGGAGCTGCCTACGGGTATCATACCAGGTTCTGAAAA
GATCAGGAGAATCGTTGAAGTCTTAAGAGCTGATGTAATCCAGGGCCTGGGGATTCAACTCTTAGAGCAG
GTGTTTGATCTTTTGGGAGAGGAAGATGAGTTGGAGAGAGAGGCACGATTACAGGAGCACATGGGAGACA
AGTATACAACTTACTGTGTGAAAGCTCGCCAATTGAAATTTTTTGAAGAAAATGTGAGTTTTTGA

Translation (744 aa):
MPQAAYCYMRVVGRGSYGEVTLVKHRRDGKQYVIKKLNLRNASSRERRAAEQEAQLLSQLKHPNIVTYKE
SWEGGDGLLYIVMGFCEGGDLYRKLKEQKGQLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLT
RTNIIKVGDLGIARVLENHGDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD
MNSLVYRIIEGKLPPMPKVYSTELAELIRTMLSRRPEERPSVRSILRQPYIKHHISLFLEATKAKTSKNN
VKNCDSRAKPVAAVVSRKEESNTDVIHYQPRSSEGSALHVMGEDKCLSQEKPVDIGPLRSPASLEGHTGK
QDMNNTGESCATISRINIDILPAERRDSANAGVVQESQPQHVDAADEVDSQCSISQEKERLQGNTKSSDQ
PGNLLPRRSSDGGDGEGSELVKPLYPSNKDQKPDQFQELPPRLLPSYPGIGKVDIIATQQNDGNQGGPVA
GCVNSSRTSSTASAKDRPLSARERRRLKQSQEEMLPSGPAVQRTPSAVEPLKPQEEDQPIPAQRFSSDCS
ITQMNHTLPREKEKRLMHGLSEDELSSSTSSTDKSDGDSREGKSHTNEMKDLVQLMTQTLRLEAKESCED
LQVLNPGSEFRLHRKYRDTLVLHGKVAEEVEPHCTELPTGIIPGSEKIRRIVEVLRADVIQGLGIQLLEQ
VFDLLGEEDELEREARLQEHMGDKYTTYCVKARQLKFFEENVSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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