NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88482.1 Public Mus musculus 13 Brd9 23 108 98 CCDS HistoryNCBI Gene:105246Re-query CCDS DB by CCDS ID:88482.1Re-query CCDS DB by GeneID:105246See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222399.1 ENSMUSP00000152390.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222399.1Link to Ensembl Protein Viewer:ENSMUSP00000152390.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222399Re-query CCDS DB by Protein ID:ENSMUSP00000152390
Original member NCBI NM_001308041.1 NP_001294970.1 Updated not alive Link to Nucleotide Sequence:NM_001308041.1Link to Protein Sequence:NP_001294970.1Re-query CCDS DB by Nucleotide ID:NM_001308041Re-query CCDS DB by Protein ID:NP_001294970
Current member NCBI NM_001308041.2 NP_001294970.1 Accepted alive Link to Nucleotide Sequence:NM_001308041.2Link to Protein Sequence:NP_001294970.1Re-query CCDS DB by Nucleotide ID:NM_001308041Re-query CCDS DB by Protein ID:NP_001294970Link to BLAST:NP_001294970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294970.1 596 Q3UQU0 596 100% 0 0

Chromosomal Locations for CCDS 88482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73937894 73937945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73938434 73938648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73938865 73938997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73940237 73940297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73940646 73940790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73941944 73942054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73942694 73942806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73944726 73944858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73946084 73946159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73947677 73947772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73950075 73950207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73951534 73951645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73954545 73954583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73955422 73955524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73957713 73957880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73960238 73960338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGGCAAAAAGCACAAGAAGCACAAGGCGGAATGGCGCTCGTCCTACGAAGATTATACAGACACGCCAC
TGGAGAAGCCTCTGAAGCTGGTGCTCAAGGTGGGAGGAAGTGAAGTGACAGAGCTCTCAGGATCTGGCCA
CGACTCCAGCTACTACGACGATCGCTCAGACCACGAACGGGAGAGACACAGAGAAAAGAAGAAAAAGAAG
AAGAAAAAGTCAGAGAAGGAGAAGCACCTCGATGAGGAGGAGAGGAGGAAGCGGAAGGAAGAGAAGAAAC
GGAAACGGGAGAAGGAACACTGCGACTCAGAGGGGGAGGCTGATGCTTTCGACCCTGGAAAGAAGGTGGA
GGTGGAGCCACCCCCAGACCGACCAGTGAGAGCCTGCCGAACACAGCCAGCTGAGAACGAGAGCACACCT
ATCCAGAGGCTTCTGGAACACTTCCTCCGCCAGCTACAGAGAAAAGATCCTCATGGATTTTTTGCTTTTC
CTGTTACGGATGCAATTGCTCCTGGGTATTCAATGATAATAAAACATCCTATGGACTTTGGCACGATGAA
AGACAAGATTGTAGCTAATGAATATAAATCAGTCACAGAATTTAAGGCAGATTTCAAATTAATGTGTGAT
AATGCGATGACGTACAATAGACCAGACACCGTGTACTACAAATTAGCCAAGAAGATCCTGCACGCGGGCT
TTAAGATGATGAGCAAAGCAGCTCTCTTGGGCAGTGAAGACCCAGCAGCTGAGGAACCTGTTCCCGAGGT
TGTCCCAGTGCAAGTAGAAACTACCAAGAAATCCAAAAAGCCGAGTAGAGAAGTTATCAGCTGCATGTTT
GAGCCTGAAGGGAATGCCTGCAGCCTGACAGACAGCACGGCAGAGGAGCATGTGCTAGCCCTGGTAGAGC
ACGCAGCTGATGAGGCTCGGGACAGGATTAACCGGTTTCTCCCGGGTGGCAAGATGGGGTACCTGAAGAA
GCTTGGAGATGGAAGTCTGCTCTACAGCGTGGTGAACGCACCTGAGCCTGATGCTGATGAGGAGGAGACA
CACCCTGTGGACCTGAGTTCACTGTCTAGCAAGTTGCTCCCAGGTTTTACAACATTGGGTTTCAAAGATG
AAAGAAGAAATAAAGTCACATTCCTCTCCAGTGCCAGCACTGCACTTTCAATGCAGAACAACTCTGTGTT
TGGGGACCTGAAGTCAGATGAGATGGAGCTTCTGTATTCCGCCTATGGAGATGAGACTGGTGTGCAGTGT
GCACTGAGCCTGCAGGAATTCGTGAAGGATGCTGGAAGCTATAGCAAGAAGATGGTAGATGACCTCCTGG
ACCAAATCACAGGTGGTGATCACTCAAGGATGATCTTCCAGCTGAAGCAGAGGAGGAGCATCCCCATGAG
ACCTGCAGATGAGATGAAGGTTGGGGATCCACTGGGAGAGAGTGGTGGCCCTGTTCTGGACTTCATGTCA
ATGAAACAGTATCCTGATGTCTCCCTGGATGTGTCCATGCTCAGCTCTCTCGGGAAAGTAAAGAAGGAGC
TGGACCATGAAGATAGCCACTTGAACTTGGATGAGACAGCCAGGCTCCTGCAGGACTTACACGAAGCACA
AGCAGAGCGAGGAGGCTCTCGGCCATCCTCCAACCTTAGCTCTCTGTCCACTGCCTCTGAGAGGGAGCAT
CCTCCTCCAGGAAGTCCTTCTCGCCTTAGTGTTGGGGAGCAGCCGGATGTCGCCCACGACCCTTATGAAT
TCCTTCAGTCTCCAGAACCTGCAGCTCCTGCCAAGAACTAA

Translation (596 aa):
MGKKHKKHKAEWRSSYEDYTDTPLEKPLKLVLKVGGSEVTELSGSGHDSSYYDDRSDHERERHREKKKKK
KKKSEKEKHLDEEERRKRKEEKKRKREKEHCDSEGEADAFDPGKKVEVEPPPDRPVRACRTQPAENESTP
IQRLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCD
NAMTYNRPDTVYYKLAKKILHAGFKMMSKAALLGSEDPAAEEPVPEVVPVQVETTKKSKKPSREVISCMF
EPEGNACSLTDSTAEEHVLALVEHAADEARDRINRFLPGGKMGYLKKLGDGSLLYSVVNAPEPDADEEET
HPVDLSSLSSKLLPGFTTLGFKDERRNKVTFLSSASTALSMQNNSVFGDLKSDEMELLYSAYGDETGVQC
ALSLQEFVKDAGSYSKKMVDDLLDQITGGDHSRMIFQLKQRRSIPMRPADEMKVGDPLGESGGPVLDFMS
MKQYPDVSLDVSMLSSLGKVKKELDHEDSHLNLDETARLLQDLHEAQAERGGSRPSSNLSSLSTASEREH
PPPGSPSRLSVGEQPDVAHDPYEFLQSPEPAAPAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH