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Report for CCDS88479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88479.1 Public Mus musculus 13 Slc6a18 23 108 98 CCDS HistoryNCBI Gene:22598Re-query CCDS DB by CCDS ID:88479.1Re-query CCDS DB by GeneID:22598See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220650.1 ENSMUSP00000152403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220650.1Link to Ensembl Protein Viewer:ENSMUSP00000152403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220650Re-query CCDS DB by Protein ID:ENSMUSP00000152403
Original member Current member NCBI NM_001168645.1 NP_001162116.1 Accepted alive Link to Nucleotide Sequence:NM_001168645.1Link to Protein Sequence:NP_001162116.1Re-query CCDS DB by Nucleotide ID:NM_001168645Re-query CCDS DB by Protein ID:NP_001162116Link to BLAST:NP_001162116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162116.1 514 O88576-5 514 100% 0 0

Chromosomal Locations for CCDS 88479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73664148 73664313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73666311 73666470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73666693 73666783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73668131 73668287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73669926 73670054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73671608 73671720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73672735 73672845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73674436 73674617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73675369 73675506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73675722 73675862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73677773 73677929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGCACAGGCCTCAGGGATGGACCCGCTTGTGGACATTGAGGATGAAAGACCCAAGTGGGACAACAAAC
TCCAGTACCTCCTGAGCTGCATCGGTTTTGCTGTGGGGCTGGGGAACATATGGAGGTTCCCCTACCTGTG
CCAGACCCACGGAGGAGGGGCCTTCCTCATCCCCTATTTCATTGCCCTGGTCTTTGAGGGTATCCCGCTT
TTCTACATCGAGCTTGCCATTGGCCAGCGCCTACGGAGGGGAAGCATTGGAGTGTGGAAGACCATCTCCC
CTTACCTCGGTGGCGTAGGCCTGGGCTGCTTCTCAGTGTCCTTCCTGGTCAGTTTGTACTACAACACGGT
TCTCCTGTGGGTCTTATGGTTCTTCCTCAACTCCTTCCAACACCCGCTGCCCTGGAGCACATGTCCGCTG
GATCTCAACAGAACAGGATTTGTGCAGGAATGCCAGAGCAGTGGCACCGTGAGCTACTTCTGGTACCGGC
AGACTCTGAATATCACATCTGACATCAGCAACACAGGCACTATCCAATGGAAGCTGTTCCTCTGCCTGGT
GGCCTGCTGGTCAACTGTGTACCTGTGTGTCATCAGAGGCATTGAGAGCACGGGGAAGGTGATCTACTTT
ACAGCCTTATTCCCTTACCTGGTGCTAACCATCTTCCTCATCAGAGGTCTTACCCTGCCTGGAGCAACAG
AGGGCCTGATCTACCTGTTTACTCCCAATATGAAGACTCTTCAGAATCCACGGGTGTGGTTGGATGCAGC
CACCCAGATTTTCTTCTCCCTGTCCCTGGCCTTTGGAGGGCATATTGCTTTTGCAAGCTACAACCCACCC
AGGAACAATTGTGAGAAGGACGCCGTGATTATTGCCCTGGTCAACAGCATGACCTCCCTGTATGCATCCA
TCGCCATCTTCTCCGTCATGGGGTTCAAGGCATCCAATGACTATGGAAGGTGCCTGGACAGAAATATCTT
GAGCCTCATCAATGAGTTTGACCTTCCAGAGCTTAGCATCTCCAGGGATGAGTACCCATCTGTCCTCATG
TACCTGAATGCCACTCAGACTGCGAGGGTGGCCCAACTTCCCCTGAAGACCTGCCATCTGGAAGATTTTC
TGGATAAGCCCACCTGGAAGCAGATCTCCGGGGCCCGTGTTCTTGGAGAAGGCTGTGCCAGGCTGACTTC
TAGAGTCTGTGAAGCCTCAGTGCTCCCAGGGGTGATCTGCTTTGCCTGTTTCCTCTCAGCCATTTGCTTC
ACACTGCAGTCTGGAGGCTACTGGTTGGAGATCTTTGACAGTTTTGCAGCTTCTCTGAATTTAATCATCT
TCGCCTTCATGGAAGTGGTGGGAGTCATTCACATTTATGGGATGAAACGGAACATTTTCCCTCAAGAGAG
GAGAAGTTCTACCCAGGCTGGGTGCAGGTCACCTGTGTGCTCCTGTCCTTCCTGCCCTCACTGTGGGTCC
CTGGAGTTGCTCTGGCTCAGTTACTGTCCCAGTACAAACAGAGGTGGAAGGCTACGCATCTGGAAAGTGG
TCTGA

Translation (514 aa):
MAQASGMDPLVDIEDERPKWDNKLQYLLSCIGFAVGLGNIWRFPYLCQTHGGGAFLIPYFIALVFEGIPL
FYIELAIGQRLRRGSIGVWKTISPYLGGVGLGCFSVSFLVSLYYNTVLLWVLWFFLNSFQHPLPWSTCPL
DLNRTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWSTVYLCVIRGIESTGKVIYF
TALFPYLVLTIFLIRGLTLPGATEGLIYLFTPNMKTLQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPP
RNNCEKDAVIIALVNSMTSLYASIAIFSVMGFKASNDYGRCLDRNILSLINEFDLPELSISRDEYPSVLM
YLNATQTARVAQLPLKTCHLEDFLDKPTWKQISGARVLGEGCARLTSRVCEASVLPGVICFACFLSAICF
TLQSGGYWLEIFDSFAASLNLIIFAFMEVVGVIHIYGMKRNIFPQERRSSTQAGCRSPVCSCPSCPHCGS
LELLWLSYCPSTNRGGRLRIWKVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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