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Report for CCDS88467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88467.1 Public Mus musculus 13 Ctsj 23 108 98 CCDS HistoryNCBI Gene:26898Re-query CCDS DB by CCDS ID:88467.1Re-query CCDS DB by GeneID:26898See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224224.1 ENSMUSP00000153389.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224224.1Link to Ensembl Protein Viewer:ENSMUSP00000153389.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224224Re-query CCDS DB by Protein ID:ENSMUSP00000153389
Original member Current member NCBI NM_001356291.1 NP_001343220.1 Accepted alive Link to Nucleotide Sequence:NM_001356291.1Link to Protein Sequence:NP_001343220.1Re-query CCDS DB by Nucleotide ID:NM_001356291Re-query CCDS DB by Protein ID:NP_001343220Link to BLAST:NP_001343220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343220.1 334 Q9R014 334 100% 0 0

Chromosomal Locations for CCDS 88467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61000477 61000579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61001327 61001444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61002403 61002565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61003024 61003248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61003707 61003853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61003996 61004118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61004425 61004550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGACTCCTACTGTCCTTCTGTTAATCCTGTGCTTTGGAGTGGCCTCAGGTGCCCAAGCACATGATCCCA
AATTGGATGCTGAGTGGAAAGACTGGAAGACTAAATATGCAAAATCATACAGTCCGAAGGAAGAAGCACT
GAGGAGAGCAGTATGGGAAGAAAACATGAGAATGATCAAACTGCACAACAAGGAGAATAGTCTGGGGAAG
AATAACTTCACCATGAAAATGAATAAATTTGGTGACCAGACCAGTGAAGAATTCAGAAAATCAATAGACA
ATATTCCAATTCCTGCTGCCATGACAGACCCACATGCCCAGAACCATGTATCTATTGGTTTACCCGATTA
TAAGGATTGGAGAGAGGAAGGCTATGTGACTCCTGTACGGAATCAGGGTAAATGTGGCTCTTGTTGGGCT
TTTGCTGCAGCTGGTGCCATAGAAGGTCAGATGTTCTGGAAAACTGGCAACCTCACCCCTCTAAGTGTGC
AGAACCTATTGGACTGTTCTAAAACTGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACACCAAGCATT
CGAGTATGTTTTGAAAAATAAAGGTCTTGAAGCTGAGGCAACCTATCCATACGAAGGAAAAGACGGACCC
TGCAGGTACCGTAGTGAGAACGCTAGTGCTAATATCACAGATTATGTGAACCTCCCACCGAATGAGCTTT
ACCTATGGGTTGCTGTAGCATCTATTGGGCCTGTCTCTGCTGCCATTGATGCTTCTCATGACTCTTTCAG
GTTCTACAATGGAGGTATTTATTATGAGCCAAATTGCAGCAGTTACTTTGTGAATCATGCAGTTCTGGTG
GTTGGCTATGGATCTGAGGGAGATGTGAAAGATGGTAATAACTACTGGCTGATCAAGAACAGCTGGGGTG
AAGAATGGGGCATGAATGGCTACATGCAGATTGCCAAAGATCACAACAACCACTGTGGAATTGCTTCACT
TGCCAGCTATCCCAATATATTTTGA

Translation (334 aa):
MTPTVLLLILCFGVASGAQAHDPKLDAEWKDWKTKYAKSYSPKEEALRRAVWEENMRMIKLHNKENSLGK
NNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWA
FAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGP
CRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLV
VGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASYPNIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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