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Report for CCDS88361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88361.1 Public Mus musculus 12 Susd6 23 108 98 CCDS HistoryNCBI Gene:217684Re-query CCDS DB by CCDS ID:88361.1Re-query CCDS DB by GeneID:217684See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220238.1 ENSMUSP00000151831.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220238.1Link to Ensembl Protein Viewer:ENSMUSP00000151831.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220238Re-query CCDS DB by Protein ID:ENSMUSP00000151831
Original member Current member NCBI NM_001242419.1 NP_001229348.1 Accepted alive Link to Nucleotide Sequence:NM_001242419.1Link to Protein Sequence:NP_001229348.1Re-query CCDS DB by Nucleotide ID:NM_001242419Re-query CCDS DB by Protein ID:NP_001229348Link to BLAST:NP_001229348.1

Chromosomal Locations for CCDS 88361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80828123 80828243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80851214 80851276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80868427 80868624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80870075 80870210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80874149 80874576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80877096 80877121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGTGCCATGGCAAGATAGCACCAAAGAGCAGCTCAGAGTTTGTTGTGACTTCTGTGGGGCATGGAGTGT
TTCTTCAACTGGTGATCCTTTGCGCTCTGCTGGGAGATGGATTAGCCTCTGGTAAATGGATGGAACTAGA
AAATATCCTGAGTGAGGTAACCCAGACCCAAAAGGACATGCATGTGTGTCCTCTGCCCCCAGAGCCAGAG
AATGGTGGCTACATTTGCCACCCCCGGCCTTGTAAAGACCCCTTGACAGCAGGCAGTGTCATCGAGTACC
TGTGTGCAGAAGGCTACATGTTGAAGGGTGACTACAAATACCTGACCTGCAAAAATGGCGAGTGGACGCC
AGCCATGGAGGTTAGCTGTCATCTCATTGAAGACAAAGAAACCCATGCACTTGGGGTCCCTGCGCTGTCC
ATAGTGGCTTCCACTGCCAGCTCTGTGGCACTCATTCTCCTCCTCGTGGTGCTGTTTGTACTGCTGCAGC
CAAAGCTGAAGTCTTTCCATCATAGCAGGCGTGAACAGGGGGTTTCTGGGGATCAAGTCTCCATTATGGT
GGATGGTGTCCAGGTTGCACTACCTTCATATGAGGAAGCTGTGTATGGAAGTTCTGGTCACTGCATGCCA
CCAGCTGATCCCAGAGTACAGATTGTTCTGTCGGAAGGGTCTGCACCTAGTGGGAGGAACATGCCAAGGG
AACAGCAGCTGCAAGGCCAGGAGGCCTGCTCTTCTGCAGGTGGAGAGGACGAGGCCCCGGGCCATTCTGG
GCTGTGTGAAGCCTGGGGTTCCCAGGGCTCAGAGACTGTGATGGTGCATCAGGCAACCACATCTTCCTGG
GTGGCCGGCTCAGGGAGCAGCCGGCCGACACACAAAGACACTGCAGATTCAGAAAACAGTGACATACAAA
GCCTTTTATCCCTCACATCAGAGGAGTACACAGATGATATCCCACTATTGAAAGAAGCATGA

Translation (323 aa):
MCHGKIAPKSSSEFVVTSVGHGVFLQLVILCALLGDGLASGKWMELENILSEVTQTQKDMHVCPLPPEPE
NGGYICHPRPCKDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWTPAMEVSCHLIEDKETHALGVPALS
IVASTASSVALILLLVVLFVLLQPKLKSFHHSRREQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHCMP
PADPRVQIVLSEGSAPSGRNMPREQQLQGQEACSSAGGEDEAPGHSGLCEAWGSQGSETVMVHQATTSSW
VAGSGSSRPTHKDTADSENSDIQSLLSLTSEEYTDDIPLLKEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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