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Report for CCDS88343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88343.1 Public Mus musculus 12 Mia2 23 108 98 CCDS HistoryNCBI Gene:338320Re-query CCDS DB by CCDS ID:88343.1Re-query CCDS DB by GeneID:338320See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176322.7 ENSMUSP00000135100.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176322.7Link to Ensembl Protein Viewer:ENSMUSP00000135100.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176322Re-query CCDS DB by Protein ID:ENSMUSP00000135100
Current member NCBI NM_001374760.1 NP_001361689.1 Accepted alive Link to Nucleotide Sequence:NM_001374760.1Link to Protein Sequence:NP_001361689.1Re-query CCDS DB by Nucleotide ID:NM_001374760Re-query CCDS DB by Protein ID:NP_001361689Link to BLAST:NP_001361689.1

Chromosomal Locations for CCDS 88343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59131545 59131604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59136064 59136195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137581 59137602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137698 59137786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59144699 59144770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146336 59146362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146847 59146957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59147852 59147923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59149464 59149568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59154356 59154478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59158253 59158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59159591 59159637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59160176 59160266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59162881 59163019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59168934 59169035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170258 59170318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170957 59170992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59172525 59172592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59174106 59174188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59176331 59176459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59179850 59180008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59184187 59184303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59185729 59185787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59188311 59188545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59189636 59189799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGGCCGGGCCTGGGGCGGCGGCGGGTTGCGCGCGGCGGGTTCTGGAGCAGCTGCGCTGGGTTGTGGCAG
CATTGCCTGAAGATATGAGAGCAGACTTTAATCCCAGTGGTTTTTCGTTGGAATTGGCAGTATGTGTGCT
TTCCGTTGGACTGCTTGCCGTGGTCTTGTTTCTGTGGCGAGGCTTCCGATCAATTCGAAGCCGATTTTAT
GTGGGGAGAGAAAAGAAACTTGCTCTTGAGCTTTCTGCACTAATTGAAGAAAAATGTAAACTGCTTGACA
AAGTCAGCATTGTTCAAAAGGAGTATGAAGGCTTAGAGTCATCTTTAAAGGAGGCCAGCTTTGAGAAGGA
GTCAACAGAAGCACAAAGTTTGGAGTTTGTTGAAGGATCACAAATATCAGAGGCCACCTATGAAAATCTG
GAACAATCCAAATCTAAACTTGAAGATGAAATACTACTCCTAGAGGAAAAGCTGGAAGAAGAGCGAGCTA
AACATTCTGAACAAGACGAGCTGATGGCTGATATTTCAAAAAGGATACAGTCCCTAGAAGATGAATCAAA
ATCTCTCAAATCGCAAGTAGCTGAAGCCAAAACAACCTTTAGAATATTTGAAATCAATGAAGAGCGACTC
AAGGGAGCAATAAAAGATGCCTTGAATGAAAATTCTCAGCTTCAGGAAAGCCAGAAACAGCTTTTACAGG
AAACTGAAATGATGAAAGAACAAGTGAATGATCTCGATAAACAGAAAGTGGCATTGGAAGAGTCCAGAGC
ACAGGCGGAACAAGCTCTGAGTGAGAAGGAGAGTCAGATTGAGACTCTGGTCACGAGCCTGCTAAAGATG
AAGGATTGGGCTGCTGTGCTTGGAGAAGCAGATGATGGGAATCTGGACTTGGACATGAAGAGTGGCCTAG
AAAACACTGCTGCCTTAGATAATCAGCCAAAGGGCGCTTTGAAGAAGCTGATTTATGCAGCTAAGTTAAA
TGCTTCTTTAAAAGCCTTGGAAGGAGAACGAAATCAAGTTTACACTCAGTTATCTGAAGTGGATCAAGTA
AAAGAAGACCTTACAGAGCATATCAAAAGTCTTGAGTCTAAACAAGCATCTTTGCAGTCAGAAAAGACAG
AGTTTGAAAGTGAGAGCCAGAAACTTCAGCAGAAACTGAAAGTGATAACCGAGCTGTACCAAGAAAATGA
AATGAAACTTCACAGGAAATTAACAGTAGAAGAAAATTACCGATTAGAGAAAGAAGAAAAACTTTCCAAA
GTAGATGAGAAAATCAGCCATGCGACCGAGGAGCTGGAGACCTGCAGGCAGCGTGCCAAGGATCTTGAAG
AAGAGCTGGAGAGAACAATTCATTCTTACCAGGGGCAGGTTATTTCTCATGAAAAAAAAGCACATGATAA
TTGGCTGGCAGCTCGGACTCTTGAAAGAAATCTCAATGATTTAAGAAAAGAAAATGCCCACAACAGACAA
AAATTAACTGAAACAGAGTTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCACTTGATGTTCCAAACA
CAGCATTTGGCAGAGAGCACTCCCCATATGGTCCCTCACCATTGGGCCGACCTCCATCTGAAACGAGAGC
TTTTCTCTCTCCTCCAACTTTGTTGGAGGGTCCACTAAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGA
AGAGGCTCACGAGGCCCTGAGAACCTTCTGGACCATCAGATGAACACTGAAAGAGGAGAGTCAAGCTATG
ACAGATTATCTGATGCTCCCAGAGCACCTTCCGACAGGTCCCTGTCACCTCCGTGGGAACAAGATCGAAG
GATGACAGCCCATCCGCCACCAGGCCAACCATATTCTGATCCAGCTCTACAAAGGCAAGATCGGTTTTAT
CCTAATTCTGGTAGACTCTCTGGACCAGCAGAACTCAGAAGTTATAATATGCCCTCTTTGGATAAAGTGG
ATGGGCCAGTACCCTCAGAAATGGAGTCCAGTGGAAACGGTACCAAAGATAATCTTGGTAACTCTAATGT
GCCTGATTCTCCTATCCCTGCTGAATGCGAAGCAGCTGGCCGTGGCTTCTTCCCTCCACCCTTTCCTCCA
GTCAGAGACCCATTGTTTCCAGTGGATCCAAGGAGCCAGTTCATGAGAAGGGGCCCCTCTTTCCCCCCAC
CTCCTCCAGGAAGCATCTATGCAGCTCCTCGAGATTATTTTCCACCAAGGGACTTCCCTGGCCCACCACT
TCCTCCGTTCCCAGGGAGAACTGTGTACGCACCGAGGGGCTTTCCACCTTACCTTCCCCCCAGAGCTGGG
TTCTTCCCCCCACCCCCACATCCTGAAAGTAGAAGTGAGCTCCCCCCAGACTTGATTCCGCCTTCAAAAG
AGCCTGCAGCTGACCCTCCAGAAACACAGGAGGCCTGA

Translation (805 aa):
MAGPGAAAGCARRVLEQLRWVVAALPEDMRADFNPSGFSLELAVCVLSVGLLAVVLFLWRGFRSIRSRFY
VGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENL
EQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERL
KGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKM
KDWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQV
KEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSK
VDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQ
KLTETEFKFELLEKDPYALDVPNTAFGREHSPYGPSPLGRPPSETRAFLSPPTLLEGPLRLSPLLPGGGG
RGSRGPENLLDHQMNTERGESSYDRLSDAPRAPSDRSLSPPWEQDRRMTAHPPPGQPYSDPALQRQDRFY
PNSGRLSGPAELRSYNMPSLDKVDGPVPSEMESSGNGTKDNLGNSNVPDSPIPAECEAAGRGFFPPPFPP
VRDPLFPVDPRSQFMRRGPSFPPPPPGSIYAAPRDYFPPRDFPGPPLPPFPGRTVYAPRGFPPYLPPRAG
FFPPPPHPESRSELPPDLIPPSKEPAADPPETQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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