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Report for CCDS88324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88324.1 Public Mus musculus 12 Prkar2b 23 108 98 CCDS HistoryNCBI Gene:19088Re-query CCDS DB by CCDS ID:88324.1Re-query CCDS DB by GeneID:19088See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146865.1 ENSMUSP00000135290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146865.1Link to Ensembl Protein Viewer:ENSMUSP00000135290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146865Re-query CCDS DB by Protein ID:ENSMUSP00000135290
Original member Current member NCBI NM_001364408.1 NP_001351337.1 Accepted alive Link to Nucleotide Sequence:NM_001364408.1Link to Protein Sequence:NP_001351337.1Re-query CCDS DB by Nucleotide ID:NM_001364408Re-query CCDS DB by Protein ID:NP_001351337Link to BLAST:NP_001351337.1

Chromosomal Locations for CCDS 88324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31960389 31960522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31962999 31963137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31963898 31963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31965115 31965189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31967213 31967314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31972050 31972203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31975919 31976019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGTCCCAAGTTTTAGATGCCATGTTTGAAAAATTGGTCAAAGAAGGGGAACACGTAATTGACCAAGGTG
ATGACGGTGACAACTTTTACGTCATTGACAGAGGAACATTTGATATTTATGTAAAATGTGATGGCGTTGG
AAGATGCGTCGGTAACTATGATAACCGTGGGAGTTTTGGAGAACTGGCCTTAATGTACAATACACCCAGA
GCAGCTACAATCACTGCTACCTCTCCTGGTGCTCTGTGGGGTTTGGACAGGGTGACCTTCAGGAGAATAA
TTGTAAAAAACAATGCCAAAAAGAGGAAGATGTACGAGAGCTTTATCGAGTCCCTGCCGTTCCTCAAGTC
TCTAGAGGTTTCTGAACGCCTGAAGGTGGTGGATGTGATTGGCACCAAAGTTTACAATGATGGAGAGCAG
ATCATTGCTCAGGGAGATTTGGCAGACTCTTTCTTCATTGTAGAATCTGGAGAAGTGAAAATTACTATGA
AAAGAAAGGGTAAATCAGAAGTTGAAGAGAACGGAGCTGTGGAAATCGCTCGGTGCTTTCGGGGCCAGTA
CTTTGGAGAGCTTGCCCTGGTCACTAACAAACCAAGAGCAGCGTCTGCACACGCCATCGGGACTGTCAAA
TGCTTAGCCATGGATGTGCAAGCATTTGAAAGGCTTTTGGGACCTTGCATGGAAATTATGAAGAGGAACA
TCGCCACCTATGAAGAACAATTAGTTGCGCTGTTTGGAACAAACATGGATATTGTTGAGCCCACTGCATG
A

Translation (256 aa):
MSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPR
AATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQ
IIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVK
CLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTNMDIVEPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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